Gene : PGSC0003DMG400012623 S. tuberosum v4.03
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3109
Name:  ? PGSC0003DMG400012623 Secondary Identifier:  ? PAC:37424431
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
PGSC0003DMG400012623 0.5kb upstream 0.5kb upstream 3597 true ST4.03ch02: 47634046-47637642 Solanum tuberosum
PGSC0003DMG400012623 0.5kb upstream 0.5kb upstream 500 false ST4.03ch02: 47634046-47634545 Solanum tuberosum
PGSC0003DMG400012623 0.5kb downstream 0.5kb downstream 3597 true ST4.03ch02: 47634546-47638142 Solanum tuberosum
PGSC0003DMG400012623 0.5kb downstream 0.5kb downstream 500 false ST4.03ch02: 47637643-47638142 Solanum tuberosum
PGSC0003DMG400012623 1.0kb upstream 1.0kb upstream 4097 true ST4.03ch02: 47633546-47637642 Solanum tuberosum
PGSC0003DMG400012623 1.0kb upstream 1.0kb upstream 1000 false ST4.03ch02: 47633546-47634545 Solanum tuberosum
PGSC0003DMG400012623 1.0kb downstream 1.0kb downstream 4097 true ST4.03ch02: 47634546-47638642 Solanum tuberosum
PGSC0003DMG400012623 1.0kb downstream 1.0kb downstream 1000 false ST4.03ch02: 47637643-47638642 Solanum tuberosum
PGSC0003DMG400012623 2.0kb upstream 2.0kb upstream 5097 true ST4.03ch02: 47632546-47637642 Solanum tuberosum
PGSC0003DMG400012623 2.0kb upstream 2.0kb upstream 2000 false ST4.03ch02: 47632546-47634545 Solanum tuberosum
PGSC0003DMG400012623 2.0kb downstream 2.0kb downstream 5097 true ST4.03ch02: 47634546-47639642 Solanum tuberosum
PGSC0003DMG400012623 2.0kb downstream 2.0kb downstream 2000 false ST4.03ch02: 47637643-47639642 Solanum tuberosum
PGSC0003DMG400012623 5.0kb upstream 5.0kb upstream 8097 true ST4.03ch02: 47629546-47637642 Solanum tuberosum
PGSC0003DMG400012623 5.0kb upstream 5.0kb upstream 5000 false ST4.03ch02: 47629546-47634545 Solanum tuberosum
PGSC0003DMG400012623 5.0kb downstream 5.0kb downstream 8097 true ST4.03ch02: 47634546-47642642 Solanum tuberosum
PGSC0003DMG400012623 5.0kb downstream 5.0kb downstream 5000 false ST4.03ch02: 47637643-47642642 Solanum tuberosum
PGSC0003DMG400012623 10.0kb upstream 10.0kb upstream 13097 true ST4.03ch02: 47624546-47637642 Solanum tuberosum
PGSC0003DMG400012623 10.0kb upstream 10.0kb upstream 10000 false ST4.03ch02: 47624546-47634545 Solanum tuberosum
PGSC0003DMG400012623 10.0kb downstream 10.0kb downstream 13097 true ST4.03ch02: 47634546-47647642 Solanum tuberosum
PGSC0003DMG400012623 10.0kb downstream 10.0kb downstream 10000 false ST4.03ch02: 47637643-47647642 Solanum tuberosum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480329 5263 Asterids View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain