Gene : Thecc1EG000508 T. cacao v1.1
Defline:  (1 of 1) PTHR16166//PTHR16166:SF98 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // SUBFAMILY NOT NAMED Genomic Order:  438
Name:  ? Thecc1EG000508 Secondary Identifier:  ? PAC:27436780
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000508 0.5kb upstream 0.5kb upstream 24420 true scaffold_1: 2084592-2109011 Theobroma cacao
Thecc1EG000508 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 2108512-2109011 Theobroma cacao
Thecc1EG000508 0.5kb downstream 0.5kb downstream 24420 true scaffold_1: 2084092-2108511 Theobroma cacao
Thecc1EG000508 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 2084092-2084591 Theobroma cacao
Thecc1EG000508 1.0kb upstream 1.0kb upstream 24920 true scaffold_1: 2084592-2109511 Theobroma cacao
Thecc1EG000508 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 2108512-2109511 Theobroma cacao
Thecc1EG000508 1.0kb downstream 1.0kb downstream 24920 true scaffold_1: 2083592-2108511 Theobroma cacao
Thecc1EG000508 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 2083592-2084591 Theobroma cacao
Thecc1EG000508 2.0kb upstream 2.0kb upstream 25920 true scaffold_1: 2084592-2110511 Theobroma cacao
Thecc1EG000508 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 2108512-2110511 Theobroma cacao
Thecc1EG000508 2.0kb downstream 2.0kb downstream 25920 true scaffold_1: 2082592-2108511 Theobroma cacao
Thecc1EG000508 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 2082592-2084591 Theobroma cacao
Thecc1EG000508 5.0kb upstream 5.0kb upstream 28920 true scaffold_1: 2084592-2113511 Theobroma cacao
Thecc1EG000508 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 2108512-2113511 Theobroma cacao
Thecc1EG000508 5.0kb downstream 5.0kb downstream 28920 true scaffold_1: 2079592-2108511 Theobroma cacao
Thecc1EG000508 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 2079592-2084591 Theobroma cacao
Thecc1EG000508 10.0kb upstream 10.0kb upstream 33920 true scaffold_1: 2084592-2118511 Theobroma cacao
Thecc1EG000508 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 2108512-2118511 Theobroma cacao
Thecc1EG000508 10.0kb downstream 10.0kb downstream 33920 true scaffold_1: 2074592-2108511 Theobroma cacao
Thecc1EG000508 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 2074592-2084591 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830490 5264 Brassicales-Malvales View MSA
124337349 5266 SBM View MSA
124238186 5268 Malvidae View MSA
124073517 5270 Rosid View MSA
123745544 5271 Pentapetalae View MSA
122793580 5272 Eudicot View MSA
122042840 5273 Angiosperm View MSA
121343832 5274 Embryophyte View MSA
123379927 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain