Gene : Thecc1EG000464 T. cacao v1.1
Defline:  (1 of 1) PTHR12313//PTHR12313:SF12 - RNF5 // RING ZINC FINGER PROTEIN-RELATED Genomic Order:  403
Name:  ? Thecc1EG000464 Secondary Identifier:  ? PAC:27436673
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000464 0.5kb upstream 0.5kb upstream 2233 true scaffold_1: 1910868-1913100 Theobroma cacao
Thecc1EG000464 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 1910868-1911367 Theobroma cacao
Thecc1EG000464 0.5kb downstream 0.5kb downstream 2233 true scaffold_1: 1911368-1913600 Theobroma cacao
Thecc1EG000464 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 1913101-1913600 Theobroma cacao
Thecc1EG000464 1.0kb upstream 1.0kb upstream 2733 true scaffold_1: 1910368-1913100 Theobroma cacao
Thecc1EG000464 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 1910368-1911367 Theobroma cacao
Thecc1EG000464 1.0kb downstream 1.0kb downstream 2733 true scaffold_1: 1911368-1914100 Theobroma cacao
Thecc1EG000464 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 1913101-1914100 Theobroma cacao
Thecc1EG000464 2.0kb upstream 2.0kb upstream 3733 true scaffold_1: 1909368-1913100 Theobroma cacao
Thecc1EG000464 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 1909368-1911367 Theobroma cacao
Thecc1EG000464 2.0kb downstream 2.0kb downstream 3733 true scaffold_1: 1911368-1915100 Theobroma cacao
Thecc1EG000464 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 1913101-1915100 Theobroma cacao
Thecc1EG000464 5.0kb upstream 5.0kb upstream 6733 true scaffold_1: 1906368-1913100 Theobroma cacao
Thecc1EG000464 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 1906368-1911367 Theobroma cacao
Thecc1EG000464 5.0kb downstream 5.0kb downstream 6733 true scaffold_1: 1911368-1918100 Theobroma cacao
Thecc1EG000464 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 1913101-1918100 Theobroma cacao
Thecc1EG000464 10.0kb upstream 10.0kb upstream 11733 true scaffold_1: 1901368-1913100 Theobroma cacao
Thecc1EG000464 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 1901368-1911367 Theobroma cacao
Thecc1EG000464 10.0kb downstream 10.0kb downstream 11733 true scaffold_1: 1911368-1923100 Theobroma cacao
Thecc1EG000464 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 1913101-1923100 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827533 5264 Brassicales-Malvales View MSA
124340698 5266 SBM View MSA
124252660 5268 Malvidae View MSA
124066658 5270 Rosid View MSA
123750017 5271 Pentapetalae View MSA
122793132 5272 Eudicot View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain