Gene : Thecc1EG000842 T. cacao v1.1
Defline:  (1 of 1) KOG0148//KOG0149 - Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) // Predicted RNA-binding protein SEB4 (RRM superfamily) Genomic Order:  738
Name:  ? Thecc1EG000842 Secondary Identifier:  ? PAC:27433283
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000842 0.5kb upstream 0.5kb upstream 5262 true scaffold_1: 3733842-3739103 Theobroma cacao
Thecc1EG000842 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3733842-3734341 Theobroma cacao
Thecc1EG000842 0.5kb downstream 0.5kb downstream 5262 true scaffold_1: 3734342-3739603 Theobroma cacao
Thecc1EG000842 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3739104-3739603 Theobroma cacao
Thecc1EG000842 1.0kb upstream 1.0kb upstream 5762 true scaffold_1: 3733342-3739103 Theobroma cacao
Thecc1EG000842 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3733342-3734341 Theobroma cacao
Thecc1EG000842 1.0kb downstream 1.0kb downstream 5762 true scaffold_1: 3734342-3740103 Theobroma cacao
Thecc1EG000842 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3739104-3740103 Theobroma cacao
Thecc1EG000842 2.0kb upstream 2.0kb upstream 6762 true scaffold_1: 3732342-3739103 Theobroma cacao
Thecc1EG000842 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3732342-3734341 Theobroma cacao
Thecc1EG000842 2.0kb downstream 2.0kb downstream 6762 true scaffold_1: 3734342-3741103 Theobroma cacao
Thecc1EG000842 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3739104-3741103 Theobroma cacao
Thecc1EG000842 5.0kb upstream 5.0kb upstream 9762 true scaffold_1: 3729342-3739103 Theobroma cacao
Thecc1EG000842 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3729342-3734341 Theobroma cacao
Thecc1EG000842 5.0kb downstream 5.0kb downstream 9762 true scaffold_1: 3734342-3744103 Theobroma cacao
Thecc1EG000842 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3739104-3744103 Theobroma cacao
Thecc1EG000842 10.0kb upstream 10.0kb upstream 14762 true scaffold_1: 3724342-3739103 Theobroma cacao
Thecc1EG000842 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3724342-3734341 Theobroma cacao
Thecc1EG000842 10.0kb downstream 10.0kb downstream 14762 true scaffold_1: 3734342-3749103 Theobroma cacao
Thecc1EG000842 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3739104-3749103 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029304 5273 Angiosperm View MSA
123815873 5264 Brassicales-Malvales Singleton cluster - no MSA
124312287 5266 SBM Singleton cluster - no MSA
124161478 5268 Malvidae Singleton cluster - no MSA
124041081 5270 Rosid View MSA
123758010 5271 Pentapetalae View MSA
122779010 5272 Eudicot View MSA
123429142 5275 Viridiplantae View MSA
121351304 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain