Gene : Thecc1EG000927 T. cacao v1.1
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  816
Name:  ? Thecc1EG000927 Secondary Identifier:  ? PAC:27432057
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao GLYSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-2161 Theobroma cacao pathologic  
Tcacao PWY-3841 Theobroma cacao pathologic  
Tcacao SER-GLYSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG000927 0.5kb upstream 0.5kb upstream 6301 true scaffold_1: 4212599-4218899 Theobroma cacao
Thecc1EG000927 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 4218400-4218899 Theobroma cacao
Thecc1EG000927 0.5kb downstream 0.5kb downstream 6301 true scaffold_1: 4212099-4218399 Theobroma cacao
Thecc1EG000927 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 4212099-4212598 Theobroma cacao
Thecc1EG000927 1.0kb upstream 1.0kb upstream 6801 true scaffold_1: 4212599-4219399 Theobroma cacao
Thecc1EG000927 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 4218400-4219399 Theobroma cacao
Thecc1EG000927 1.0kb downstream 1.0kb downstream 6801 true scaffold_1: 4211599-4218399 Theobroma cacao
Thecc1EG000927 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 4211599-4212598 Theobroma cacao
Thecc1EG000927 2.0kb upstream 2.0kb upstream 7801 true scaffold_1: 4212599-4220399 Theobroma cacao
Thecc1EG000927 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 4218400-4220399 Theobroma cacao
Thecc1EG000927 2.0kb downstream 2.0kb downstream 7801 true scaffold_1: 4210599-4218399 Theobroma cacao
Thecc1EG000927 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 4210599-4212598 Theobroma cacao
Thecc1EG000927 5.0kb upstream 5.0kb upstream 10801 true scaffold_1: 4212599-4223399 Theobroma cacao
Thecc1EG000927 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 4218400-4223399 Theobroma cacao
Thecc1EG000927 5.0kb downstream 5.0kb downstream 10801 true scaffold_1: 4207599-4218399 Theobroma cacao
Thecc1EG000927 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 4207599-4212598 Theobroma cacao
Thecc1EG000927 10.0kb upstream 10.0kb upstream 15801 true scaffold_1: 4212599-4228399 Theobroma cacao
Thecc1EG000927 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 4218400-4228399 Theobroma cacao
Thecc1EG000927 10.0kb downstream 10.0kb downstream 15801 true scaffold_1: 4202599-4218399 Theobroma cacao
Thecc1EG000927 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 4202599-4212598 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832063 5264 Brassicales-Malvales View MSA
124337498 5266 SBM View MSA
124238878 5268 Malvidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain