Gene : Thecc1EG001543 T. cacao v1.1
Defline:  (1 of 3) PTHR13215 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR Genomic Order:  1324
Name:  ? Thecc1EG001543 Secondary Identifier:  ? PAC:27435004
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001543 0.5kb upstream 0.5kb upstream 2879 true scaffold_1: 7806502-7809380 Theobroma cacao
Thecc1EG001543 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 7808881-7809380 Theobroma cacao
Thecc1EG001543 0.5kb downstream 0.5kb downstream 2879 true scaffold_1: 7806002-7808880 Theobroma cacao
Thecc1EG001543 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 7806002-7806501 Theobroma cacao
Thecc1EG001543 1.0kb upstream 1.0kb upstream 3379 true scaffold_1: 7806502-7809880 Theobroma cacao
Thecc1EG001543 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 7808881-7809880 Theobroma cacao
Thecc1EG001543 1.0kb downstream 1.0kb downstream 3379 true scaffold_1: 7805502-7808880 Theobroma cacao
Thecc1EG001543 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 7805502-7806501 Theobroma cacao
Thecc1EG001543 2.0kb upstream 2.0kb upstream 4379 true scaffold_1: 7806502-7810880 Theobroma cacao
Thecc1EG001543 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 7808881-7810880 Theobroma cacao
Thecc1EG001543 2.0kb downstream 2.0kb downstream 4379 true scaffold_1: 7804502-7808880 Theobroma cacao
Thecc1EG001543 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 7804502-7806501 Theobroma cacao
Thecc1EG001543 5.0kb upstream 5.0kb upstream 7379 true scaffold_1: 7806502-7813880 Theobroma cacao
Thecc1EG001543 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 7808881-7813880 Theobroma cacao
Thecc1EG001543 5.0kb downstream 5.0kb downstream 7379 true scaffold_1: 7801502-7808880 Theobroma cacao
Thecc1EG001543 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 7801502-7806501 Theobroma cacao
Thecc1EG001543 10.0kb upstream 10.0kb upstream 12379 true scaffold_1: 7806502-7818880 Theobroma cacao
Thecc1EG001543 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 7808881-7818880 Theobroma cacao
Thecc1EG001543 10.0kb downstream 10.0kb downstream 12379 true scaffold_1: 7796502-7808880 Theobroma cacao
Thecc1EG001543 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 7796502-7806501 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827407 5264 Brassicales-Malvales View MSA
124339313 5266 SBM View MSA
124244057 5268 Malvidae View MSA
124067021 5270 Rosid View MSA
123736875 5271 Pentapetalae View MSA
122796364 5272 Eudicot View MSA
122048027 5273 Angiosperm View MSA
121344440 5274 Embryophyte View MSA
123380043 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain