Gene : Thecc1EG001704 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  1460
Name:  ? Thecc1EG001704 Secondary Identifier:  ? PAC:27435702
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001704 0.5kb upstream 0.5kb upstream 2649 true scaffold_1: 8873430-8876078 Theobroma cacao
Thecc1EG001704 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 8875579-8876078 Theobroma cacao
Thecc1EG001704 0.5kb downstream 0.5kb downstream 2649 true scaffold_1: 8872930-8875578 Theobroma cacao
Thecc1EG001704 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 8872930-8873429 Theobroma cacao
Thecc1EG001704 1.0kb upstream 1.0kb upstream 3149 true scaffold_1: 8873430-8876578 Theobroma cacao
Thecc1EG001704 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 8875579-8876578 Theobroma cacao
Thecc1EG001704 1.0kb downstream 1.0kb downstream 3149 true scaffold_1: 8872430-8875578 Theobroma cacao
Thecc1EG001704 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 8872430-8873429 Theobroma cacao
Thecc1EG001704 2.0kb upstream 2.0kb upstream 4149 true scaffold_1: 8873430-8877578 Theobroma cacao
Thecc1EG001704 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 8875579-8877578 Theobroma cacao
Thecc1EG001704 2.0kb downstream 2.0kb downstream 4149 true scaffold_1: 8871430-8875578 Theobroma cacao
Thecc1EG001704 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 8871430-8873429 Theobroma cacao
Thecc1EG001704 5.0kb upstream 5.0kb upstream 7149 true scaffold_1: 8873430-8880578 Theobroma cacao
Thecc1EG001704 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 8875579-8880578 Theobroma cacao
Thecc1EG001704 5.0kb downstream 5.0kb downstream 7149 true scaffold_1: 8868430-8875578 Theobroma cacao
Thecc1EG001704 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 8868430-8873429 Theobroma cacao
Thecc1EG001704 10.0kb upstream 10.0kb upstream 12149 true scaffold_1: 8873430-8885578 Theobroma cacao
Thecc1EG001704 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 8875579-8885578 Theobroma cacao
Thecc1EG001704 10.0kb downstream 10.0kb downstream 12149 true scaffold_1: 8863430-8875578 Theobroma cacao
Thecc1EG001704 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 8863430-8873429 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
123815472 5264 Brassicales-Malvales Singleton cluster - no MSA
124311904 5266 SBM Singleton cluster - no MSA
124248903 5268 Malvidae View MSA
124037624 5270 Rosid View MSA
123753404 5271 Pentapetalae View MSA
122796607 5272 Eudicot View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain