Gene : Thecc1EG001902 T. cacao v1.1
Defline:  (1 of 191) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1599
Name:  ? Thecc1EG001902 Secondary Identifier:  ? PAC:27435056
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG001902 0.5kb upstream 0.5kb upstream 7737 true scaffold_1: 10161602-10169338 Theobroma cacao
Thecc1EG001902 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 10161602-10162101 Theobroma cacao
Thecc1EG001902 0.5kb downstream 0.5kb downstream 7737 true scaffold_1: 10162102-10169838 Theobroma cacao
Thecc1EG001902 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 10169339-10169838 Theobroma cacao
Thecc1EG001902 1.0kb upstream 1.0kb upstream 8237 true scaffold_1: 10161102-10169338 Theobroma cacao
Thecc1EG001902 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 10161102-10162101 Theobroma cacao
Thecc1EG001902 1.0kb downstream 1.0kb downstream 8237 true scaffold_1: 10162102-10170338 Theobroma cacao
Thecc1EG001902 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 10169339-10170338 Theobroma cacao
Thecc1EG001902 2.0kb upstream 2.0kb upstream 9237 true scaffold_1: 10160102-10169338 Theobroma cacao
Thecc1EG001902 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 10160102-10162101 Theobroma cacao
Thecc1EG001902 2.0kb downstream 2.0kb downstream 9237 true scaffold_1: 10162102-10171338 Theobroma cacao
Thecc1EG001902 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 10169339-10171338 Theobroma cacao
Thecc1EG001902 5.0kb upstream 5.0kb upstream 12237 true scaffold_1: 10157102-10169338 Theobroma cacao
Thecc1EG001902 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 10157102-10162101 Theobroma cacao
Thecc1EG001902 5.0kb downstream 5.0kb downstream 12237 true scaffold_1: 10162102-10174338 Theobroma cacao
Thecc1EG001902 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 10169339-10174338 Theobroma cacao
Thecc1EG001902 10.0kb upstream 10.0kb upstream 17237 true scaffold_1: 10152102-10169338 Theobroma cacao
Thecc1EG001902 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 10152102-10162101 Theobroma cacao
Thecc1EG001902 10.0kb downstream 10.0kb downstream 17237 true scaffold_1: 10162102-10179338 Theobroma cacao
Thecc1EG001902 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 10169339-10179338 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123830526 5264 Brassicales-Malvales View MSA
124346164 5266 SBM View MSA
124240877 5268 Malvidae View MSA
124061532 5270 Rosid View MSA
123741129 5271 Pentapetalae View MSA
122786104 5272 Eudicot View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain