Gene : Thecc1EG002289 T. cacao v1.1
Defline:  (1 of 5) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  1831
Name:  ? Thecc1EG002289 Secondary Identifier:  ? PAC:27433498
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG002289 0.5kb upstream 0.5kb upstream 5851 true scaffold_1: 12893463-12899313 Theobroma cacao
Thecc1EG002289 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12898814-12899313 Theobroma cacao
Thecc1EG002289 0.5kb downstream 0.5kb downstream 5851 true scaffold_1: 12892963-12898813 Theobroma cacao
Thecc1EG002289 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12892963-12893462 Theobroma cacao
Thecc1EG002289 1.0kb upstream 1.0kb upstream 6351 true scaffold_1: 12893463-12899813 Theobroma cacao
Thecc1EG002289 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12898814-12899813 Theobroma cacao
Thecc1EG002289 1.0kb downstream 1.0kb downstream 6351 true scaffold_1: 12892463-12898813 Theobroma cacao
Thecc1EG002289 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12892463-12893462 Theobroma cacao
Thecc1EG002289 2.0kb upstream 2.0kb upstream 7351 true scaffold_1: 12893463-12900813 Theobroma cacao
Thecc1EG002289 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12898814-12900813 Theobroma cacao
Thecc1EG002289 2.0kb downstream 2.0kb downstream 7351 true scaffold_1: 12891463-12898813 Theobroma cacao
Thecc1EG002289 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12891463-12893462 Theobroma cacao
Thecc1EG002289 5.0kb upstream 5.0kb upstream 10351 true scaffold_1: 12893463-12903813 Theobroma cacao
Thecc1EG002289 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12898814-12903813 Theobroma cacao
Thecc1EG002289 5.0kb downstream 5.0kb downstream 10351 true scaffold_1: 12888463-12898813 Theobroma cacao
Thecc1EG002289 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12888463-12893462 Theobroma cacao
Thecc1EG002289 10.0kb upstream 10.0kb upstream 15351 true scaffold_1: 12893463-12908813 Theobroma cacao
Thecc1EG002289 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12898814-12908813 Theobroma cacao
Thecc1EG002289 10.0kb downstream 10.0kb downstream 15351 true scaffold_1: 12883463-12898813 Theobroma cacao
Thecc1EG002289 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12883463-12893462 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain