Gene : Thecc1EG002215 T. cacao v1.1
Defline:  (1 of 1) 2.4.1.182 - Lipid-A-disaccharide synthase Genomic Order:  1794
Name:  ? Thecc1EG002215 Secondary Identifier:  ? PAC:27434585
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao NAGLIPASYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG002215 0.5kb upstream 0.5kb upstream 6350 true scaffold_1: 12444983-12451332 Theobroma cacao
Thecc1EG002215 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 12444983-12445482 Theobroma cacao
Thecc1EG002215 0.5kb downstream 0.5kb downstream 6350 true scaffold_1: 12445483-12451832 Theobroma cacao
Thecc1EG002215 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 12451333-12451832 Theobroma cacao
Thecc1EG002215 1.0kb upstream 1.0kb upstream 6850 true scaffold_1: 12444483-12451332 Theobroma cacao
Thecc1EG002215 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 12444483-12445482 Theobroma cacao
Thecc1EG002215 1.0kb downstream 1.0kb downstream 6850 true scaffold_1: 12445483-12452332 Theobroma cacao
Thecc1EG002215 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 12451333-12452332 Theobroma cacao
Thecc1EG002215 2.0kb upstream 2.0kb upstream 7850 true scaffold_1: 12443483-12451332 Theobroma cacao
Thecc1EG002215 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 12443483-12445482 Theobroma cacao
Thecc1EG002215 2.0kb downstream 2.0kb downstream 7850 true scaffold_1: 12445483-12453332 Theobroma cacao
Thecc1EG002215 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 12451333-12453332 Theobroma cacao
Thecc1EG002215 5.0kb upstream 5.0kb upstream 10850 true scaffold_1: 12440483-12451332 Theobroma cacao
Thecc1EG002215 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 12440483-12445482 Theobroma cacao
Thecc1EG002215 5.0kb downstream 5.0kb downstream 10850 true scaffold_1: 12445483-12456332 Theobroma cacao
Thecc1EG002215 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 12451333-12456332 Theobroma cacao
Thecc1EG002215 10.0kb upstream 10.0kb upstream 15850 true scaffold_1: 12435483-12451332 Theobroma cacao
Thecc1EG002215 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 12435483-12445482 Theobroma cacao
Thecc1EG002215 10.0kb downstream 10.0kb downstream 15850 true scaffold_1: 12445483-12461332 Theobroma cacao
Thecc1EG002215 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 12451333-12461332 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832263 5264 Brassicales-Malvales View MSA
124341423 5266 SBM View MSA
124243091 5268 Malvidae View MSA
124067392 5270 Rosid View MSA
123747166 5271 Pentapetalae View MSA
122791278 5272 Eudicot View MSA
122042549 5273 Angiosperm View MSA
121345953 5274 Embryophyte View MSA
123380297 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain