Gene : Thecc1EG004064 T. cacao v1.1
Defline:  (1 of 5) 2.5.1.20 - Rubber cis-polyprenylcistransferase / Rubber transferase Genomic Order:  2579
Name:  ? Thecc1EG004064 Secondary Identifier:  ? PAC:27434771
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5815 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG004064 0.5kb upstream 0.5kb upstream 8185 true scaffold_1: 28932406-28940590 Theobroma cacao
Thecc1EG004064 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 28940091-28940590 Theobroma cacao
Thecc1EG004064 0.5kb downstream 0.5kb downstream 8185 true scaffold_1: 28931906-28940090 Theobroma cacao
Thecc1EG004064 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 28931906-28932405 Theobroma cacao
Thecc1EG004064 1.0kb upstream 1.0kb upstream 8685 true scaffold_1: 28932406-28941090 Theobroma cacao
Thecc1EG004064 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 28940091-28941090 Theobroma cacao
Thecc1EG004064 1.0kb downstream 1.0kb downstream 8685 true scaffold_1: 28931406-28940090 Theobroma cacao
Thecc1EG004064 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 28931406-28932405 Theobroma cacao
Thecc1EG004064 2.0kb upstream 2.0kb upstream 9685 true scaffold_1: 28932406-28942090 Theobroma cacao
Thecc1EG004064 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 28940091-28942090 Theobroma cacao
Thecc1EG004064 2.0kb downstream 2.0kb downstream 9685 true scaffold_1: 28930406-28940090 Theobroma cacao
Thecc1EG004064 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 28930406-28932405 Theobroma cacao
Thecc1EG004064 5.0kb upstream 5.0kb upstream 12685 true scaffold_1: 28932406-28945090 Theobroma cacao
Thecc1EG004064 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 28940091-28945090 Theobroma cacao
Thecc1EG004064 5.0kb downstream 5.0kb downstream 12685 true scaffold_1: 28927406-28940090 Theobroma cacao
Thecc1EG004064 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 28927406-28932405 Theobroma cacao
Thecc1EG004064 10.0kb upstream 10.0kb upstream 17685 true scaffold_1: 28932406-28950090 Theobroma cacao
Thecc1EG004064 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 28940091-28950090 Theobroma cacao
Thecc1EG004064 10.0kb downstream 10.0kb downstream 17685 true scaffold_1: 28922406-28940090 Theobroma cacao
Thecc1EG004064 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 28922406-28932405 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840236 5264 Brassicales-Malvales View MSA
124322693 5266 SBM View MSA
124251595 5268 Malvidae View MSA
123952616 5270 Rosid View MSA
123753715 5271 Pentapetalae View MSA
122795896 5272 Eudicot View MSA
122049873 5273 Angiosperm View MSA
121349663 5274 Embryophyte View MSA
123426106 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain