Gene : Thecc1EG004895 T. cacao v1.1
Defline:  (1 of 1) PTHR31375//PTHR31375:SF43 - FAMILY NOT NAMED // GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  3191
Name:  ? Thecc1EG004895 Secondary Identifier:  ? PAC:27435888
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG004895 0.5kb upstream 0.5kb upstream 2925 true scaffold_1: 33989320-33992244 Theobroma cacao
Thecc1EG004895 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33991745-33992244 Theobroma cacao
Thecc1EG004895 0.5kb downstream 0.5kb downstream 2925 true scaffold_1: 33988820-33991744 Theobroma cacao
Thecc1EG004895 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33988820-33989319 Theobroma cacao
Thecc1EG004895 1.0kb upstream 1.0kb upstream 3425 true scaffold_1: 33989320-33992744 Theobroma cacao
Thecc1EG004895 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33991745-33992744 Theobroma cacao
Thecc1EG004895 1.0kb downstream 1.0kb downstream 3425 true scaffold_1: 33988320-33991744 Theobroma cacao
Thecc1EG004895 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33988320-33989319 Theobroma cacao
Thecc1EG004895 2.0kb upstream 2.0kb upstream 4425 true scaffold_1: 33989320-33993744 Theobroma cacao
Thecc1EG004895 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33991745-33993744 Theobroma cacao
Thecc1EG004895 2.0kb downstream 2.0kb downstream 4425 true scaffold_1: 33987320-33991744 Theobroma cacao
Thecc1EG004895 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33987320-33989319 Theobroma cacao
Thecc1EG004895 5.0kb upstream 5.0kb upstream 7425 true scaffold_1: 33989320-33996744 Theobroma cacao
Thecc1EG004895 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33991745-33996744 Theobroma cacao
Thecc1EG004895 5.0kb downstream 5.0kb downstream 7425 true scaffold_1: 33984320-33991744 Theobroma cacao
Thecc1EG004895 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33984320-33989319 Theobroma cacao
Thecc1EG004895 10.0kb upstream 10.0kb upstream 12425 true scaffold_1: 33989320-34001744 Theobroma cacao
Thecc1EG004895 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33991745-34001744 Theobroma cacao
Thecc1EG004895 10.0kb downstream 10.0kb downstream 12425 true scaffold_1: 33979320-33991744 Theobroma cacao
Thecc1EG004895 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33979320-33989319 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841630 5264 Brassicales-Malvales View MSA
124345370 5266 SBM View MSA
124249445 5268 Malvidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain