Gene : Thecc1EG005783 T. cacao v1.1
Defline:  (1 of 2) PTHR23084:SF156 - RADIAL SPOKE HEAD 10 HOMOLOG B2 Genomic Order:  3963
Name:  ? Thecc1EG005783 Secondary Identifier:  ? PAC:27433440
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6351 Theobroma cacao pathologic  
Tcacao PWY-6352 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG005783 0.5kb upstream 0.5kb upstream 4004 true scaffold_1: 38224546-38228549 Theobroma cacao
Thecc1EG005783 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 38224546-38225045 Theobroma cacao
Thecc1EG005783 0.5kb downstream 0.5kb downstream 4004 true scaffold_1: 38225046-38229049 Theobroma cacao
Thecc1EG005783 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 38228550-38229049 Theobroma cacao
Thecc1EG005783 1.0kb upstream 1.0kb upstream 4504 true scaffold_1: 38224046-38228549 Theobroma cacao
Thecc1EG005783 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 38224046-38225045 Theobroma cacao
Thecc1EG005783 1.0kb downstream 1.0kb downstream 4504 true scaffold_1: 38225046-38229549 Theobroma cacao
Thecc1EG005783 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 38228550-38229549 Theobroma cacao
Thecc1EG005783 2.0kb upstream 2.0kb upstream 5504 true scaffold_1: 38223046-38228549 Theobroma cacao
Thecc1EG005783 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 38223046-38225045 Theobroma cacao
Thecc1EG005783 2.0kb downstream 2.0kb downstream 5504 true scaffold_1: 38225046-38230549 Theobroma cacao
Thecc1EG005783 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 38228550-38230549 Theobroma cacao
Thecc1EG005783 5.0kb upstream 5.0kb upstream 8504 true scaffold_1: 38220046-38228549 Theobroma cacao
Thecc1EG005783 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 38220046-38225045 Theobroma cacao
Thecc1EG005783 5.0kb downstream 5.0kb downstream 8504 true scaffold_1: 38225046-38233549 Theobroma cacao
Thecc1EG005783 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 38228550-38233549 Theobroma cacao
Thecc1EG005783 10.0kb upstream 10.0kb upstream 13504 true scaffold_1: 38215046-38228549 Theobroma cacao
Thecc1EG005783 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 38215046-38225045 Theobroma cacao
Thecc1EG005783 10.0kb downstream 10.0kb downstream 13504 true scaffold_1: 38225046-38238549 Theobroma cacao
Thecc1EG005783 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 38228550-38238549 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839636 5264 Brassicales-Malvales View MSA
124340371 5266 SBM View MSA
124254332 5268 Malvidae View MSA
124068935 5270 Rosid View MSA
123741886 5271 Pentapetalae View MSA
122788830 5272 Eudicot View MSA
122047970 5273 Angiosperm View MSA
121346800 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain