Gene : Thecc1EG006321 T. cacao v1.1
Defline:  (1 of 1) PTHR22594//PTHR22594:SF5 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARTATE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  301
Name:  ? Thecc1EG006321 Secondary Identifier:  ? PAC:27459603
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao TRNA-CHARGING-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG006321 0.5kb upstream 0.5kb upstream 5954 true scaffold_2: 1689296-1695249 Theobroma cacao
Thecc1EG006321 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 1689296-1689795 Theobroma cacao
Thecc1EG006321 0.5kb downstream 0.5kb downstream 5954 true scaffold_2: 1689796-1695749 Theobroma cacao
Thecc1EG006321 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 1695250-1695749 Theobroma cacao
Thecc1EG006321 1.0kb upstream 1.0kb upstream 6454 true scaffold_2: 1688796-1695249 Theobroma cacao
Thecc1EG006321 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 1688796-1689795 Theobroma cacao
Thecc1EG006321 1.0kb downstream 1.0kb downstream 6454 true scaffold_2: 1689796-1696249 Theobroma cacao
Thecc1EG006321 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 1695250-1696249 Theobroma cacao
Thecc1EG006321 2.0kb upstream 2.0kb upstream 7454 true scaffold_2: 1687796-1695249 Theobroma cacao
Thecc1EG006321 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 1687796-1689795 Theobroma cacao
Thecc1EG006321 2.0kb downstream 2.0kb downstream 7454 true scaffold_2: 1689796-1697249 Theobroma cacao
Thecc1EG006321 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 1695250-1697249 Theobroma cacao
Thecc1EG006321 5.0kb upstream 5.0kb upstream 10454 true scaffold_2: 1684796-1695249 Theobroma cacao
Thecc1EG006321 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 1684796-1689795 Theobroma cacao
Thecc1EG006321 5.0kb downstream 5.0kb downstream 10454 true scaffold_2: 1689796-1700249 Theobroma cacao
Thecc1EG006321 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 1695250-1700249 Theobroma cacao
Thecc1EG006321 10.0kb upstream 10.0kb upstream 15454 true scaffold_2: 1679796-1695249 Theobroma cacao
Thecc1EG006321 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 1679796-1689795 Theobroma cacao
Thecc1EG006321 10.0kb downstream 10.0kb downstream 15454 true scaffold_2: 1689796-1705249 Theobroma cacao
Thecc1EG006321 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 1695250-1705249 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123833366 5264 Brassicales-Malvales View MSA
124350265 5266 SBM View MSA
124243191 5268 Malvidae View MSA
124067030 5270 Rosid View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain