Gene : Thecc1EG006915 T. cacao v1.1
Defline:  (1 of 82) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  837
Name:  ? Thecc1EG006915 Secondary Identifier:  ? PAC:27459807
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG006915 0.5kb upstream 0.5kb upstream 3285 true scaffold_2: 4439288-4442572 Theobroma cacao
Thecc1EG006915 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 4439288-4439787 Theobroma cacao
Thecc1EG006915 0.5kb downstream 0.5kb downstream 3285 true scaffold_2: 4439788-4443072 Theobroma cacao
Thecc1EG006915 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 4442573-4443072 Theobroma cacao
Thecc1EG006915 1.0kb upstream 1.0kb upstream 3785 true scaffold_2: 4438788-4442572 Theobroma cacao
Thecc1EG006915 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 4438788-4439787 Theobroma cacao
Thecc1EG006915 1.0kb downstream 1.0kb downstream 3785 true scaffold_2: 4439788-4443572 Theobroma cacao
Thecc1EG006915 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 4442573-4443572 Theobroma cacao
Thecc1EG006915 2.0kb upstream 2.0kb upstream 4785 true scaffold_2: 4437788-4442572 Theobroma cacao
Thecc1EG006915 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 4437788-4439787 Theobroma cacao
Thecc1EG006915 2.0kb downstream 2.0kb downstream 4785 true scaffold_2: 4439788-4444572 Theobroma cacao
Thecc1EG006915 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 4442573-4444572 Theobroma cacao
Thecc1EG006915 5.0kb upstream 5.0kb upstream 7785 true scaffold_2: 4434788-4442572 Theobroma cacao
Thecc1EG006915 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 4434788-4439787 Theobroma cacao
Thecc1EG006915 5.0kb downstream 5.0kb downstream 7785 true scaffold_2: 4439788-4447572 Theobroma cacao
Thecc1EG006915 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 4442573-4447572 Theobroma cacao
Thecc1EG006915 10.0kb upstream 10.0kb upstream 12785 true scaffold_2: 4429788-4442572 Theobroma cacao
Thecc1EG006915 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 4429788-4439787 Theobroma cacao
Thecc1EG006915 10.0kb downstream 10.0kb downstream 12785 true scaffold_2: 4439788-4452572 Theobroma cacao
Thecc1EG006915 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 4442573-4452572 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839556 5264 Brassicales-Malvales View MSA
124344392 5266 SBM View MSA
124243300 5268 Malvidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain