Gene : Thecc1EG008094 T. cacao v1.1
Defline:  (1 of 1) PTHR12313//PTHR12313:SF5 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  1738
Name:  ? Thecc1EG008094 Secondary Identifier:  ? PAC:27463321
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG008094 0.5kb upstream 0.5kb upstream 3704 true scaffold_2: 11057814-11061517 Theobroma cacao
Thecc1EG008094 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11061018-11061517 Theobroma cacao
Thecc1EG008094 0.5kb downstream 0.5kb downstream 3704 true scaffold_2: 11057314-11061017 Theobroma cacao
Thecc1EG008094 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11057314-11057813 Theobroma cacao
Thecc1EG008094 1.0kb upstream 1.0kb upstream 4204 true scaffold_2: 11057814-11062017 Theobroma cacao
Thecc1EG008094 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11061018-11062017 Theobroma cacao
Thecc1EG008094 1.0kb downstream 1.0kb downstream 4204 true scaffold_2: 11056814-11061017 Theobroma cacao
Thecc1EG008094 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11056814-11057813 Theobroma cacao
Thecc1EG008094 2.0kb upstream 2.0kb upstream 5204 true scaffold_2: 11057814-11063017 Theobroma cacao
Thecc1EG008094 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11061018-11063017 Theobroma cacao
Thecc1EG008094 2.0kb downstream 2.0kb downstream 5204 true scaffold_2: 11055814-11061017 Theobroma cacao
Thecc1EG008094 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11055814-11057813 Theobroma cacao
Thecc1EG008094 5.0kb upstream 5.0kb upstream 8204 true scaffold_2: 11057814-11066017 Theobroma cacao
Thecc1EG008094 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11061018-11066017 Theobroma cacao
Thecc1EG008094 5.0kb downstream 5.0kb downstream 8204 true scaffold_2: 11052814-11061017 Theobroma cacao
Thecc1EG008094 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11052814-11057813 Theobroma cacao
Thecc1EG008094 10.0kb upstream 10.0kb upstream 13204 true scaffold_2: 11057814-11071017 Theobroma cacao
Thecc1EG008094 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11061018-11071017 Theobroma cacao
Thecc1EG008094 10.0kb downstream 10.0kb downstream 13204 true scaffold_2: 11047814-11061017 Theobroma cacao
Thecc1EG008094 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11047814-11057813 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123829632 5264 Brassicales-Malvales View MSA
124321613 5266 SBM View MSA
124252908 5268 Malvidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain