Gene : Thecc1EG008374 T. cacao v1.1
Defline:  (1 of 13) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  1890
Name:  ? Thecc1EG008374 Secondary Identifier:  ? PAC:27462436
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG008374 0.5kb upstream 0.5kb upstream 46290 true scaffold_2: 13023766-13070055 Theobroma cacao
Thecc1EG008374 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13023766-13024265 Theobroma cacao
Thecc1EG008374 0.5kb downstream 0.5kb downstream 46290 true scaffold_2: 13024266-13070555 Theobroma cacao
Thecc1EG008374 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13070056-13070555 Theobroma cacao
Thecc1EG008374 1.0kb upstream 1.0kb upstream 46790 true scaffold_2: 13023266-13070055 Theobroma cacao
Thecc1EG008374 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13023266-13024265 Theobroma cacao
Thecc1EG008374 1.0kb downstream 1.0kb downstream 46790 true scaffold_2: 13024266-13071055 Theobroma cacao
Thecc1EG008374 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13070056-13071055 Theobroma cacao
Thecc1EG008374 2.0kb upstream 2.0kb upstream 47790 true scaffold_2: 13022266-13070055 Theobroma cacao
Thecc1EG008374 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13022266-13024265 Theobroma cacao
Thecc1EG008374 2.0kb downstream 2.0kb downstream 47790 true scaffold_2: 13024266-13072055 Theobroma cacao
Thecc1EG008374 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13070056-13072055 Theobroma cacao
Thecc1EG008374 5.0kb upstream 5.0kb upstream 50790 true scaffold_2: 13019266-13070055 Theobroma cacao
Thecc1EG008374 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13019266-13024265 Theobroma cacao
Thecc1EG008374 5.0kb downstream 5.0kb downstream 50790 true scaffold_2: 13024266-13075055 Theobroma cacao
Thecc1EG008374 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13070056-13075055 Theobroma cacao
Thecc1EG008374 10.0kb upstream 10.0kb upstream 55790 true scaffold_2: 13014266-13070055 Theobroma cacao
Thecc1EG008374 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13014266-13024265 Theobroma cacao
Thecc1EG008374 10.0kb downstream 10.0kb downstream 55790 true scaffold_2: 13024266-13080055 Theobroma cacao
Thecc1EG008374 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13070056-13080055 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827272 5264 Brassicales-Malvales View MSA
124321416 5266 SBM View MSA
124248912 5268 Malvidae View MSA
124074204 5270 Rosid View MSA
123738265 5271 Pentapetalae View MSA
122792462 5272 Eudicot View MSA
122051461 5273 Angiosperm View MSA
121348224 5274 Embryophyte View MSA
123380779 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain