Gene : Thecc1EG009535 T. cacao v1.1
Defline:  (1 of 1) PF00665//PF03732//PF07722//PF07727 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Peptidase C26 (Peptidase_C26) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) Genomic Order:  2212
Name:  ? Thecc1EG009535 Secondary Identifier:  ? PAC:27460710
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009535 0.5kb upstream 0.5kb upstream 10438 true scaffold_2: 25024686-25035123 Theobroma cacao
Thecc1EG009535 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 25024686-25025185 Theobroma cacao
Thecc1EG009535 0.5kb downstream 0.5kb downstream 10438 true scaffold_2: 25025186-25035623 Theobroma cacao
Thecc1EG009535 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 25035124-25035623 Theobroma cacao
Thecc1EG009535 1.0kb upstream 1.0kb upstream 10938 true scaffold_2: 25024186-25035123 Theobroma cacao
Thecc1EG009535 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 25024186-25025185 Theobroma cacao
Thecc1EG009535 1.0kb downstream 1.0kb downstream 10938 true scaffold_2: 25025186-25036123 Theobroma cacao
Thecc1EG009535 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 25035124-25036123 Theobroma cacao
Thecc1EG009535 2.0kb upstream 2.0kb upstream 11938 true scaffold_2: 25023186-25035123 Theobroma cacao
Thecc1EG009535 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 25023186-25025185 Theobroma cacao
Thecc1EG009535 2.0kb downstream 2.0kb downstream 11938 true scaffold_2: 25025186-25037123 Theobroma cacao
Thecc1EG009535 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 25035124-25037123 Theobroma cacao
Thecc1EG009535 5.0kb upstream 5.0kb upstream 14938 true scaffold_2: 25020186-25035123 Theobroma cacao
Thecc1EG009535 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 25020186-25025185 Theobroma cacao
Thecc1EG009535 5.0kb downstream 5.0kb downstream 14938 true scaffold_2: 25025186-25040123 Theobroma cacao
Thecc1EG009535 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 25035124-25040123 Theobroma cacao
Thecc1EG009535 10.0kb upstream 10.0kb upstream 19938 true scaffold_2: 25015186-25035123 Theobroma cacao
Thecc1EG009535 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 25015186-25025185 Theobroma cacao
Thecc1EG009535 10.0kb downstream 10.0kb downstream 19938 true scaffold_2: 25025186-25045123 Theobroma cacao
Thecc1EG009535 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 25035124-25045123 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
123823895 5264 Brassicales-Malvales View MSA
124319948 5266 SBM View MSA
124168445 5268 Malvidae View MSA
124038233 5270 Rosid View MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain