Gene : Thecc1EG010400 T. cacao v1.1
Defline:  (1 of 1) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  2531
Name:  ? Thecc1EG010400 Secondary Identifier:  ? PAC:27460531
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG010400 0.5kb upstream 0.5kb upstream 5435 true scaffold_2: 33181135-33186569 Theobroma cacao
Thecc1EG010400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33186070-33186569 Theobroma cacao
Thecc1EG010400 0.5kb downstream 0.5kb downstream 5435 true scaffold_2: 33180635-33186069 Theobroma cacao
Thecc1EG010400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33180635-33181134 Theobroma cacao
Thecc1EG010400 1.0kb upstream 1.0kb upstream 5935 true scaffold_2: 33181135-33187069 Theobroma cacao
Thecc1EG010400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33186070-33187069 Theobroma cacao
Thecc1EG010400 1.0kb downstream 1.0kb downstream 5935 true scaffold_2: 33180135-33186069 Theobroma cacao
Thecc1EG010400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33180135-33181134 Theobroma cacao
Thecc1EG010400 2.0kb upstream 2.0kb upstream 6935 true scaffold_2: 33181135-33188069 Theobroma cacao
Thecc1EG010400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33186070-33188069 Theobroma cacao
Thecc1EG010400 2.0kb downstream 2.0kb downstream 6935 true scaffold_2: 33179135-33186069 Theobroma cacao
Thecc1EG010400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33179135-33181134 Theobroma cacao
Thecc1EG010400 5.0kb upstream 5.0kb upstream 9935 true scaffold_2: 33181135-33191069 Theobroma cacao
Thecc1EG010400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33186070-33191069 Theobroma cacao
Thecc1EG010400 5.0kb downstream 5.0kb downstream 9935 true scaffold_2: 33176135-33186069 Theobroma cacao
Thecc1EG010400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33176135-33181134 Theobroma cacao
Thecc1EG010400 10.0kb upstream 10.0kb upstream 14935 true scaffold_2: 33181135-33196069 Theobroma cacao
Thecc1EG010400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33186070-33196069 Theobroma cacao
Thecc1EG010400 10.0kb downstream 10.0kb downstream 14935 true scaffold_2: 33171135-33186069 Theobroma cacao
Thecc1EG010400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33171135-33181134 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839498 5264 Brassicales-Malvales View MSA
124342145 5266 SBM View MSA
124241872 5268 Malvidae View MSA
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain