Gene : Thecc1EG011580 T. cacao v1.1
Defline:  (1 of 1) PTHR11468//PTHR11468:SF14 - GLYCOGEN PHOSPHORYLASE // SUBFAMILY NOT NAMED Genomic Order:  3333
Name:  ? Thecc1EG011580 Secondary Identifier:  ? PAC:27464868
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7238 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011580 0.5kb upstream 0.5kb upstream 9957 true scaffold_2: 40808431-40818387 Theobroma cacao
Thecc1EG011580 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40817888-40818387 Theobroma cacao
Thecc1EG011580 0.5kb downstream 0.5kb downstream 9957 true scaffold_2: 40807931-40817887 Theobroma cacao
Thecc1EG011580 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40807931-40808430 Theobroma cacao
Thecc1EG011580 1.0kb upstream 1.0kb upstream 10457 true scaffold_2: 40808431-40818887 Theobroma cacao
Thecc1EG011580 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40817888-40818887 Theobroma cacao
Thecc1EG011580 1.0kb downstream 1.0kb downstream 10457 true scaffold_2: 40807431-40817887 Theobroma cacao
Thecc1EG011580 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40807431-40808430 Theobroma cacao
Thecc1EG011580 2.0kb upstream 2.0kb upstream 11457 true scaffold_2: 40808431-40819887 Theobroma cacao
Thecc1EG011580 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40817888-40819887 Theobroma cacao
Thecc1EG011580 2.0kb downstream 2.0kb downstream 11457 true scaffold_2: 40806431-40817887 Theobroma cacao
Thecc1EG011580 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40806431-40808430 Theobroma cacao
Thecc1EG011580 5.0kb upstream 5.0kb upstream 14457 true scaffold_2: 40808431-40822887 Theobroma cacao
Thecc1EG011580 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40817888-40822887 Theobroma cacao
Thecc1EG011580 5.0kb downstream 5.0kb downstream 14457 true scaffold_2: 40803431-40817887 Theobroma cacao
Thecc1EG011580 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40803431-40808430 Theobroma cacao
Thecc1EG011580 10.0kb upstream 10.0kb upstream 19457 true scaffold_2: 40808431-40827887 Theobroma cacao
Thecc1EG011580 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40817888-40827887 Theobroma cacao
Thecc1EG011580 10.0kb downstream 10.0kb downstream 19457 true scaffold_2: 40798431-40817887 Theobroma cacao
Thecc1EG011580 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40798431-40808430 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123826185 5264 Brassicales-Malvales View MSA
124320929 5266 SBM View MSA
124253620 5268 Malvidae View MSA
124071447 5270 Rosid View MSA
123744201 5271 Pentapetalae View MSA
122788131 5272 Eudicot View MSA
122045780 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain