Gene : Thecc1EG011913 T. cacao v1.1
Defline:  (1 of 154) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  3631
Name:  ? Thecc1EG011913 Secondary Identifier:  ? PAC:27463787
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG011913 0.5kb upstream 0.5kb upstream 2382 true scaffold_2: 42342611-42344992 Theobroma cacao
Thecc1EG011913 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42344493-42344992 Theobroma cacao
Thecc1EG011913 0.5kb downstream 0.5kb downstream 2382 true scaffold_2: 42342111-42344492 Theobroma cacao
Thecc1EG011913 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42342111-42342610 Theobroma cacao
Thecc1EG011913 1.0kb upstream 1.0kb upstream 2882 true scaffold_2: 42342611-42345492 Theobroma cacao
Thecc1EG011913 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42344493-42345492 Theobroma cacao
Thecc1EG011913 1.0kb downstream 1.0kb downstream 2882 true scaffold_2: 42341611-42344492 Theobroma cacao
Thecc1EG011913 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42341611-42342610 Theobroma cacao
Thecc1EG011913 2.0kb upstream 2.0kb upstream 3882 true scaffold_2: 42342611-42346492 Theobroma cacao
Thecc1EG011913 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42344493-42346492 Theobroma cacao
Thecc1EG011913 2.0kb downstream 2.0kb downstream 3882 true scaffold_2: 42340611-42344492 Theobroma cacao
Thecc1EG011913 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42340611-42342610 Theobroma cacao
Thecc1EG011913 5.0kb upstream 5.0kb upstream 6882 true scaffold_2: 42342611-42349492 Theobroma cacao
Thecc1EG011913 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42344493-42349492 Theobroma cacao
Thecc1EG011913 5.0kb downstream 5.0kb downstream 6882 true scaffold_2: 42337611-42344492 Theobroma cacao
Thecc1EG011913 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42337611-42342610 Theobroma cacao
Thecc1EG011913 10.0kb upstream 10.0kb upstream 11882 true scaffold_2: 42342611-42354492 Theobroma cacao
Thecc1EG011913 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42344493-42354492 Theobroma cacao
Thecc1EG011913 10.0kb downstream 10.0kb downstream 11882 true scaffold_2: 42332611-42344492 Theobroma cacao
Thecc1EG011913 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42332611-42342610 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123817647 5264 Brassicales-Malvales Singleton cluster - no MSA
124313990 5266 SBM Singleton cluster - no MSA
124163029 5268 Malvidae Singleton cluster - no MSA
123886898 5270 Rosid Singleton cluster - no MSA
123469403 5271 Pentapetalae Singleton cluster - no MSA
122504698 5272 Eudicot Singleton cluster - no MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain