Gene : Thecc1EG014019 T. cacao v1.1
Defline:  (1 of 1) PTHR10617:SF116 - GERANYLGERANYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC Genomic Order:  917
Name:  ? Thecc1EG014019 Secondary Identifier:  ? PAC:27450985
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5063 Theobroma cacao pathologic  
Tcacao PWY-5064 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG014019 0.5kb upstream 0.5kb upstream 4475 true scaffold_3: 19291465-19295939 Theobroma cacao
Thecc1EG014019 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19295440-19295939 Theobroma cacao
Thecc1EG014019 0.5kb downstream 0.5kb downstream 4475 true scaffold_3: 19290965-19295439 Theobroma cacao
Thecc1EG014019 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19290965-19291464 Theobroma cacao
Thecc1EG014019 1.0kb upstream 1.0kb upstream 4975 true scaffold_3: 19291465-19296439 Theobroma cacao
Thecc1EG014019 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19295440-19296439 Theobroma cacao
Thecc1EG014019 1.0kb downstream 1.0kb downstream 4975 true scaffold_3: 19290465-19295439 Theobroma cacao
Thecc1EG014019 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19290465-19291464 Theobroma cacao
Thecc1EG014019 2.0kb upstream 2.0kb upstream 5975 true scaffold_3: 19291465-19297439 Theobroma cacao
Thecc1EG014019 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19295440-19297439 Theobroma cacao
Thecc1EG014019 2.0kb downstream 2.0kb downstream 5975 true scaffold_3: 19289465-19295439 Theobroma cacao
Thecc1EG014019 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19289465-19291464 Theobroma cacao
Thecc1EG014019 5.0kb upstream 5.0kb upstream 8975 true scaffold_3: 19291465-19300439 Theobroma cacao
Thecc1EG014019 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19295440-19300439 Theobroma cacao
Thecc1EG014019 5.0kb downstream 5.0kb downstream 8975 true scaffold_3: 19286465-19295439 Theobroma cacao
Thecc1EG014019 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19286465-19291464 Theobroma cacao
Thecc1EG014019 10.0kb upstream 10.0kb upstream 13975 true scaffold_3: 19291465-19305439 Theobroma cacao
Thecc1EG014019 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19295440-19305439 Theobroma cacao
Thecc1EG014019 10.0kb downstream 10.0kb downstream 13975 true scaffold_3: 19281465-19295439 Theobroma cacao
Thecc1EG014019 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19281465-19291464 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123831426 5264 Brassicales-Malvales View MSA
124345987 5266 SBM View MSA
124242880 5268 Malvidae View MSA
124070478 5270 Rosid View MSA
123742493 5271 Pentapetalae View MSA
122794040 5272 Eudicot View MSA
122041542 5273 Angiosperm View MSA
121345615 5274 Embryophyte View MSA
123424772 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain