Gene : Thecc1EG014371 T. cacao v1.1
Defline:  (1 of 2) PTHR33914//PTHR33914:SF2 - FAMILY NOT NAMED // 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-RELATED PROTEIN Genomic Order:  1116
Name:  ? Thecc1EG014371 Secondary Identifier:  ? PAC:27448303
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG014371 0.5kb upstream 0.5kb upstream 5655 true scaffold_3: 21952259-21957913 Theobroma cacao
Thecc1EG014371 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 21952259-21952758 Theobroma cacao
Thecc1EG014371 0.5kb downstream 0.5kb downstream 5655 true scaffold_3: 21952759-21958413 Theobroma cacao
Thecc1EG014371 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21957914-21958413 Theobroma cacao
Thecc1EG014371 1.0kb upstream 1.0kb upstream 6155 true scaffold_3: 21951759-21957913 Theobroma cacao
Thecc1EG014371 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 21951759-21952758 Theobroma cacao
Thecc1EG014371 1.0kb downstream 1.0kb downstream 6155 true scaffold_3: 21952759-21958913 Theobroma cacao
Thecc1EG014371 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21957914-21958913 Theobroma cacao
Thecc1EG014371 2.0kb upstream 2.0kb upstream 7155 true scaffold_3: 21950759-21957913 Theobroma cacao
Thecc1EG014371 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 21950759-21952758 Theobroma cacao
Thecc1EG014371 2.0kb downstream 2.0kb downstream 7155 true scaffold_3: 21952759-21959913 Theobroma cacao
Thecc1EG014371 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21957914-21959913 Theobroma cacao
Thecc1EG014371 5.0kb upstream 5.0kb upstream 10155 true scaffold_3: 21947759-21957913 Theobroma cacao
Thecc1EG014371 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 21947759-21952758 Theobroma cacao
Thecc1EG014371 5.0kb downstream 5.0kb downstream 10155 true scaffold_3: 21952759-21962913 Theobroma cacao
Thecc1EG014371 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21957914-21962913 Theobroma cacao
Thecc1EG014371 10.0kb upstream 10.0kb upstream 15155 true scaffold_3: 21942759-21957913 Theobroma cacao
Thecc1EG014371 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 21942759-21952758 Theobroma cacao
Thecc1EG014371 10.0kb downstream 10.0kb downstream 15155 true scaffold_3: 21952759-21967913 Theobroma cacao
Thecc1EG014371 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21957914-21967913 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839504 5264 Brassicales-Malvales View MSA
124350703 5266 SBM View MSA
124253505 5268 Malvidae View MSA
124072821 5270 Rosid View MSA
123747257 5271 Pentapetalae View MSA
122794578 5272 Eudicot View MSA
122043601 5273 Angiosperm View MSA
121349006 5274 Embryophyte View MSA
123381122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain