Gene : Thecc1EG015049 T. cacao v1.1
Defline:  (1 of 2) PTHR11945:SF208 - MADS-BOX PROTEIN SOC1 Genomic Order:  1685
Name:  ? Thecc1EG015049 Secondary Identifier:  ? PAC:27450356
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015049 0.5kb upstream 0.5kb upstream 7075 true scaffold_3: 25927524-25934598 Theobroma cacao
Thecc1EG015049 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 25934099-25934598 Theobroma cacao
Thecc1EG015049 0.5kb downstream 0.5kb downstream 7075 true scaffold_3: 25927024-25934098 Theobroma cacao
Thecc1EG015049 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 25927024-25927523 Theobroma cacao
Thecc1EG015049 1.0kb upstream 1.0kb upstream 7575 true scaffold_3: 25927524-25935098 Theobroma cacao
Thecc1EG015049 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 25934099-25935098 Theobroma cacao
Thecc1EG015049 1.0kb downstream 1.0kb downstream 7575 true scaffold_3: 25926524-25934098 Theobroma cacao
Thecc1EG015049 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 25926524-25927523 Theobroma cacao
Thecc1EG015049 2.0kb upstream 2.0kb upstream 8575 true scaffold_3: 25927524-25936098 Theobroma cacao
Thecc1EG015049 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 25934099-25936098 Theobroma cacao
Thecc1EG015049 2.0kb downstream 2.0kb downstream 8575 true scaffold_3: 25925524-25934098 Theobroma cacao
Thecc1EG015049 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 25925524-25927523 Theobroma cacao
Thecc1EG015049 5.0kb upstream 5.0kb upstream 11575 true scaffold_3: 25927524-25939098 Theobroma cacao
Thecc1EG015049 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 25934099-25939098 Theobroma cacao
Thecc1EG015049 5.0kb downstream 5.0kb downstream 11575 true scaffold_3: 25922524-25934098 Theobroma cacao
Thecc1EG015049 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 25922524-25927523 Theobroma cacao
Thecc1EG015049 10.0kb upstream 10.0kb upstream 16575 true scaffold_3: 25927524-25944098 Theobroma cacao
Thecc1EG015049 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 25934099-25944098 Theobroma cacao
Thecc1EG015049 10.0kb downstream 10.0kb downstream 16575 true scaffold_3: 25917524-25934098 Theobroma cacao
Thecc1EG015049 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 25917524-25927523 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837457 5264 Brassicales-Malvales View MSA
124347813 5266 SBM View MSA
124252932 5268 Malvidae View MSA
124073798 5270 Rosid View MSA
123750432 5271 Pentapetalae View MSA
122795311 5272 Eudicot View MSA
122042392 5273 Angiosperm View MSA
121309956 5274 Embryophyte View MSA
123347576 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain