Gene : Thecc1EG015247 T. cacao v1.1
Defline:  (1 of 1) PTHR31899//PTHR31899:SF1//PTHR31899:SF3 - FAMILY NOT NAMED // BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1849
Name:  ? Thecc1EG015247 Secondary Identifier:  ? PAC:27451065
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-5944 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015247 0.5kb upstream 0.5kb upstream 3209 true scaffold_3: 26977145-26980353 Theobroma cacao
Thecc1EG015247 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 26979854-26980353 Theobroma cacao
Thecc1EG015247 0.5kb downstream 0.5kb downstream 3209 true scaffold_3: 26976645-26979853 Theobroma cacao
Thecc1EG015247 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 26976645-26977144 Theobroma cacao
Thecc1EG015247 1.0kb upstream 1.0kb upstream 3709 true scaffold_3: 26977145-26980853 Theobroma cacao
Thecc1EG015247 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 26979854-26980853 Theobroma cacao
Thecc1EG015247 1.0kb downstream 1.0kb downstream 3709 true scaffold_3: 26976145-26979853 Theobroma cacao
Thecc1EG015247 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 26976145-26977144 Theobroma cacao
Thecc1EG015247 2.0kb upstream 2.0kb upstream 4709 true scaffold_3: 26977145-26981853 Theobroma cacao
Thecc1EG015247 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 26979854-26981853 Theobroma cacao
Thecc1EG015247 2.0kb downstream 2.0kb downstream 4709 true scaffold_3: 26975145-26979853 Theobroma cacao
Thecc1EG015247 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 26975145-26977144 Theobroma cacao
Thecc1EG015247 5.0kb upstream 5.0kb upstream 7709 true scaffold_3: 26977145-26984853 Theobroma cacao
Thecc1EG015247 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 26979854-26984853 Theobroma cacao
Thecc1EG015247 5.0kb downstream 5.0kb downstream 7709 true scaffold_3: 26972145-26979853 Theobroma cacao
Thecc1EG015247 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 26972145-26977144 Theobroma cacao
Thecc1EG015247 10.0kb upstream 10.0kb upstream 12709 true scaffold_3: 26977145-26989853 Theobroma cacao
Thecc1EG015247 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 26979854-26989853 Theobroma cacao
Thecc1EG015247 10.0kb downstream 10.0kb downstream 12709 true scaffold_3: 26967145-26979853 Theobroma cacao
Thecc1EG015247 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 26967145-26977144 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123837541 5264 Brassicales-Malvales View MSA
124338230 5266 SBM View MSA
124251518 5268 Malvidae View MSA
124066838 5270 Rosid View MSA
123749049 5271 Pentapetalae View MSA
122787521 5272 Eudicot View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain