Gene : Thecc1EG015414 T. cacao v1.1
Defline:  (1 of 3) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1993
Name:  ? Thecc1EG015414 Secondary Identifier:  ? PAC:27448207
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015414 0.5kb upstream 0.5kb upstream 3436 true scaffold_3: 27834041-27837476 Theobroma cacao
Thecc1EG015414 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 27836977-27837476 Theobroma cacao
Thecc1EG015414 0.5kb downstream 0.5kb downstream 3436 true scaffold_3: 27833541-27836976 Theobroma cacao
Thecc1EG015414 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 27833541-27834040 Theobroma cacao
Thecc1EG015414 1.0kb upstream 1.0kb upstream 3936 true scaffold_3: 27834041-27837976 Theobroma cacao
Thecc1EG015414 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 27836977-27837976 Theobroma cacao
Thecc1EG015414 1.0kb downstream 1.0kb downstream 3936 true scaffold_3: 27833041-27836976 Theobroma cacao
Thecc1EG015414 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 27833041-27834040 Theobroma cacao
Thecc1EG015414 2.0kb upstream 2.0kb upstream 4936 true scaffold_3: 27834041-27838976 Theobroma cacao
Thecc1EG015414 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 27836977-27838976 Theobroma cacao
Thecc1EG015414 2.0kb downstream 2.0kb downstream 4936 true scaffold_3: 27832041-27836976 Theobroma cacao
Thecc1EG015414 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 27832041-27834040 Theobroma cacao
Thecc1EG015414 5.0kb upstream 5.0kb upstream 7936 true scaffold_3: 27834041-27841976 Theobroma cacao
Thecc1EG015414 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 27836977-27841976 Theobroma cacao
Thecc1EG015414 5.0kb downstream 5.0kb downstream 7936 true scaffold_3: 27829041-27836976 Theobroma cacao
Thecc1EG015414 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 27829041-27834040 Theobroma cacao
Thecc1EG015414 10.0kb upstream 10.0kb upstream 12936 true scaffold_3: 27834041-27846976 Theobroma cacao
Thecc1EG015414 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 27836977-27846976 Theobroma cacao
Thecc1EG015414 10.0kb downstream 10.0kb downstream 12936 true scaffold_3: 27824041-27836976 Theobroma cacao
Thecc1EG015414 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 27824041-27834040 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832922 5264 Brassicales-Malvales View MSA
124341271 5266 SBM View MSA
124251160 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain