Gene : Thecc1EG015818 T. cacao v1.1
Defline:  (1 of 2) PTHR23084:SF156 - RADIAL SPOKE HEAD 10 HOMOLOG B2 Genomic Order:  2355
Name:  ? Thecc1EG015818 Secondary Identifier:  ? PAC:27447209
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-6351 Theobroma cacao pathologic  
Tcacao PWY-6352 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG015818 0.5kb upstream 0.5kb upstream 4115 true scaffold_3: 29811998-29816112 Theobroma cacao
Thecc1EG015818 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 29815613-29816112 Theobroma cacao
Thecc1EG015818 0.5kb downstream 0.5kb downstream 4115 true scaffold_3: 29811498-29815612 Theobroma cacao
Thecc1EG015818 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 29811498-29811997 Theobroma cacao
Thecc1EG015818 1.0kb upstream 1.0kb upstream 4615 true scaffold_3: 29811998-29816612 Theobroma cacao
Thecc1EG015818 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 29815613-29816612 Theobroma cacao
Thecc1EG015818 1.0kb downstream 1.0kb downstream 4615 true scaffold_3: 29810998-29815612 Theobroma cacao
Thecc1EG015818 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 29810998-29811997 Theobroma cacao
Thecc1EG015818 2.0kb upstream 2.0kb upstream 5615 true scaffold_3: 29811998-29817612 Theobroma cacao
Thecc1EG015818 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 29815613-29817612 Theobroma cacao
Thecc1EG015818 2.0kb downstream 2.0kb downstream 5615 true scaffold_3: 29809998-29815612 Theobroma cacao
Thecc1EG015818 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 29809998-29811997 Theobroma cacao
Thecc1EG015818 5.0kb upstream 5.0kb upstream 8615 true scaffold_3: 29811998-29820612 Theobroma cacao
Thecc1EG015818 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 29815613-29820612 Theobroma cacao
Thecc1EG015818 5.0kb downstream 5.0kb downstream 8615 true scaffold_3: 29806998-29815612 Theobroma cacao
Thecc1EG015818 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 29806998-29811997 Theobroma cacao
Thecc1EG015818 10.0kb upstream 10.0kb upstream 13615 true scaffold_3: 29811998-29825612 Theobroma cacao
Thecc1EG015818 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 29815613-29825612 Theobroma cacao
Thecc1EG015818 10.0kb downstream 10.0kb downstream 13615 true scaffold_3: 29801998-29815612 Theobroma cacao
Thecc1EG015818 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 29801998-29811997 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839636 5264 Brassicales-Malvales View MSA
124340371 5266 SBM View MSA
124254332 5268 Malvidae View MSA
124068935 5270 Rosid View MSA
123741886 5271 Pentapetalae View MSA
122788830 5272 Eudicot View MSA
122047970 5273 Angiosperm View MSA
121346800 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain