Gene : Thecc1EG016038 T. cacao v1.1
Defline:  (1 of 1) K18163 - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6 (NDUFAF6) Genomic Order:  2547
Name:  ? Thecc1EG016038 Secondary Identifier:  ? PAC:27450778
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CAROTENOID-PWY Theobroma cacao pathologic  
Tcacao PWY-6475 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016038 0.5kb upstream 0.5kb upstream 2853 true scaffold_3: 30976950-30979802 Theobroma cacao
Thecc1EG016038 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 30979303-30979802 Theobroma cacao
Thecc1EG016038 0.5kb downstream 0.5kb downstream 2853 true scaffold_3: 30976450-30979302 Theobroma cacao
Thecc1EG016038 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 30976450-30976949 Theobroma cacao
Thecc1EG016038 1.0kb upstream 1.0kb upstream 3353 true scaffold_3: 30976950-30980302 Theobroma cacao
Thecc1EG016038 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 30979303-30980302 Theobroma cacao
Thecc1EG016038 1.0kb downstream 1.0kb downstream 3353 true scaffold_3: 30975950-30979302 Theobroma cacao
Thecc1EG016038 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 30975950-30976949 Theobroma cacao
Thecc1EG016038 2.0kb upstream 2.0kb upstream 4353 true scaffold_3: 30976950-30981302 Theobroma cacao
Thecc1EG016038 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 30979303-30981302 Theobroma cacao
Thecc1EG016038 2.0kb downstream 2.0kb downstream 4353 true scaffold_3: 30974950-30979302 Theobroma cacao
Thecc1EG016038 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 30974950-30976949 Theobroma cacao
Thecc1EG016038 5.0kb upstream 5.0kb upstream 7353 true scaffold_3: 30976950-30984302 Theobroma cacao
Thecc1EG016038 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 30979303-30984302 Theobroma cacao
Thecc1EG016038 5.0kb downstream 5.0kb downstream 7353 true scaffold_3: 30971950-30979302 Theobroma cacao
Thecc1EG016038 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 30971950-30976949 Theobroma cacao
Thecc1EG016038 10.0kb upstream 10.0kb upstream 12353 true scaffold_3: 30976950-30989302 Theobroma cacao
Thecc1EG016038 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 30979303-30989302 Theobroma cacao
Thecc1EG016038 10.0kb downstream 10.0kb downstream 12353 true scaffold_3: 30966950-30979302 Theobroma cacao
Thecc1EG016038 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 30966950-30976949 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832539 5264 Brassicales-Malvales View MSA
124345699 5266 SBM View MSA
124240433 5268 Malvidae View MSA
124062167 5270 Rosid View MSA
123739547 5271 Pentapetalae View MSA
122788763 5272 Eudicot View MSA
122043915 5273 Angiosperm View MSA
121344708 5274 Embryophyte View MSA
123424120 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain