Gene : Thecc1EG017009 T. cacao v1.1
Defline:  (1 of 4) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  210
Name:  ? Thecc1EG017009 Secondary Identifier:  ? PAC:27454418
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017009 0.5kb upstream 0.5kb upstream 5107 true scaffold_4: 1350721-1355827 Theobroma cacao
Thecc1EG017009 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 1350721-1351220 Theobroma cacao
Thecc1EG017009 0.5kb downstream 0.5kb downstream 5107 true scaffold_4: 1351221-1356327 Theobroma cacao
Thecc1EG017009 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 1355828-1356327 Theobroma cacao
Thecc1EG017009 1.0kb upstream 1.0kb upstream 5607 true scaffold_4: 1350221-1355827 Theobroma cacao
Thecc1EG017009 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 1350221-1351220 Theobroma cacao
Thecc1EG017009 1.0kb downstream 1.0kb downstream 5607 true scaffold_4: 1351221-1356827 Theobroma cacao
Thecc1EG017009 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 1355828-1356827 Theobroma cacao
Thecc1EG017009 2.0kb upstream 2.0kb upstream 6607 true scaffold_4: 1349221-1355827 Theobroma cacao
Thecc1EG017009 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 1349221-1351220 Theobroma cacao
Thecc1EG017009 2.0kb downstream 2.0kb downstream 6607 true scaffold_4: 1351221-1357827 Theobroma cacao
Thecc1EG017009 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 1355828-1357827 Theobroma cacao
Thecc1EG017009 5.0kb upstream 5.0kb upstream 9607 true scaffold_4: 1346221-1355827 Theobroma cacao
Thecc1EG017009 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 1346221-1351220 Theobroma cacao
Thecc1EG017009 5.0kb downstream 5.0kb downstream 9607 true scaffold_4: 1351221-1360827 Theobroma cacao
Thecc1EG017009 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 1355828-1360827 Theobroma cacao
Thecc1EG017009 10.0kb upstream 10.0kb upstream 14607 true scaffold_4: 1341221-1355827 Theobroma cacao
Thecc1EG017009 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 1341221-1351220 Theobroma cacao
Thecc1EG017009 10.0kb downstream 10.0kb downstream 14607 true scaffold_4: 1351221-1365827 Theobroma cacao
Thecc1EG017009 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 1355828-1365827 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123832052 5264 Brassicales-Malvales View MSA
124345541 5266 SBM View MSA
124242248 5268 Malvidae View MSA
124067995 5270 Rosid View MSA
123737960 5271 Pentapetalae View MSA
122786713 5272 Eudicot View MSA
122046332 5273 Angiosperm View MSA
121347677 5274 Embryophyte View MSA
123426917 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain