Gene : Thecc1EG017833 T. cacao v1.1
Defline:  (1 of 1) K03934 - NADH dehydrogenase (ubiquinone) Fe-S protein 1 (NDUFS1) Genomic Order:  650
Name:  ? Thecc1EG017833 Secondary Identifier:  ? PAC:27455880
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-3781 Theobroma cacao pathologic  
Tcacao PWY-4302 Theobroma cacao pathologic  
Tcacao PWY-5083 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017833 0.5kb upstream 0.5kb upstream 8413 true scaffold_4: 7769090-7777502 Theobroma cacao
Thecc1EG017833 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 7777003-7777502 Theobroma cacao
Thecc1EG017833 0.5kb downstream 0.5kb downstream 8413 true scaffold_4: 7768590-7777002 Theobroma cacao
Thecc1EG017833 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 7768590-7769089 Theobroma cacao
Thecc1EG017833 1.0kb upstream 1.0kb upstream 8913 true scaffold_4: 7769090-7778002 Theobroma cacao
Thecc1EG017833 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 7777003-7778002 Theobroma cacao
Thecc1EG017833 1.0kb downstream 1.0kb downstream 8913 true scaffold_4: 7768090-7777002 Theobroma cacao
Thecc1EG017833 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 7768090-7769089 Theobroma cacao
Thecc1EG017833 2.0kb upstream 2.0kb upstream 9913 true scaffold_4: 7769090-7779002 Theobroma cacao
Thecc1EG017833 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 7777003-7779002 Theobroma cacao
Thecc1EG017833 2.0kb downstream 2.0kb downstream 9913 true scaffold_4: 7767090-7777002 Theobroma cacao
Thecc1EG017833 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 7767090-7769089 Theobroma cacao
Thecc1EG017833 5.0kb upstream 5.0kb upstream 12913 true scaffold_4: 7769090-7782002 Theobroma cacao
Thecc1EG017833 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 7777003-7782002 Theobroma cacao
Thecc1EG017833 5.0kb downstream 5.0kb downstream 12913 true scaffold_4: 7764090-7777002 Theobroma cacao
Thecc1EG017833 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 7764090-7769089 Theobroma cacao
Thecc1EG017833 10.0kb upstream 10.0kb upstream 17913 true scaffold_4: 7769090-7787002 Theobroma cacao
Thecc1EG017833 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 7777003-7787002 Theobroma cacao
Thecc1EG017833 10.0kb downstream 10.0kb downstream 17913 true scaffold_4: 7759090-7777002 Theobroma cacao
Thecc1EG017833 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 7759090-7769089 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836593 5264 Brassicales-Malvales View MSA
124336428 5266 SBM View MSA
124244950 5268 Malvidae View MSA
124062856 5270 Rosid View MSA
123737847 5271 Pentapetalae View MSA
122786481 5272 Eudicot View MSA
122044121 5273 Angiosperm View MSA
121350903 5274 Embryophyte View MSA
123424434 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain