Gene : Thecc1EG018589 T. cacao v1.1
Defline:  (1 of 1) KOG0114//KOG1190//KOG4206 - Predicted RNA-binding protein (RRM superfamily) // Polypyrimidine tract-binding protein // Spliceosomal protein snRNP-U1A/U2B Genomic Order:  885
Name:  ? Thecc1EG018589 Secondary Identifier:  ? PAC:27452462
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG018589 0.5kb upstream 0.5kb upstream 7486 true scaffold_4: 16439493-16446978 Theobroma cacao
Thecc1EG018589 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 16446479-16446978 Theobroma cacao
Thecc1EG018589 0.5kb downstream 0.5kb downstream 7486 true scaffold_4: 16438993-16446478 Theobroma cacao
Thecc1EG018589 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 16438993-16439492 Theobroma cacao
Thecc1EG018589 1.0kb upstream 1.0kb upstream 7986 true scaffold_4: 16439493-16447478 Theobroma cacao
Thecc1EG018589 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 16446479-16447478 Theobroma cacao
Thecc1EG018589 1.0kb downstream 1.0kb downstream 7986 true scaffold_4: 16438493-16446478 Theobroma cacao
Thecc1EG018589 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 16438493-16439492 Theobroma cacao
Thecc1EG018589 2.0kb upstream 2.0kb upstream 8986 true scaffold_4: 16439493-16448478 Theobroma cacao
Thecc1EG018589 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 16446479-16448478 Theobroma cacao
Thecc1EG018589 2.0kb downstream 2.0kb downstream 8986 true scaffold_4: 16437493-16446478 Theobroma cacao
Thecc1EG018589 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 16437493-16439492 Theobroma cacao
Thecc1EG018589 5.0kb upstream 5.0kb upstream 11986 true scaffold_4: 16439493-16451478 Theobroma cacao
Thecc1EG018589 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 16446479-16451478 Theobroma cacao
Thecc1EG018589 5.0kb downstream 5.0kb downstream 11986 true scaffold_4: 16434493-16446478 Theobroma cacao
Thecc1EG018589 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 16434493-16439492 Theobroma cacao
Thecc1EG018589 10.0kb upstream 10.0kb upstream 16986 true scaffold_4: 16439493-16456478 Theobroma cacao
Thecc1EG018589 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 16446479-16456478 Theobroma cacao
Thecc1EG018589 10.0kb downstream 10.0kb downstream 16986 true scaffold_4: 16429493-16446478 Theobroma cacao
Thecc1EG018589 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 16429493-16439492 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838209 5264 Brassicales-Malvales View MSA
124337867 5266 SBM View MSA
124241415 5268 Malvidae View MSA
124060480 5270 Rosid View MSA
123737702 5271 Pentapetalae View MSA
122796328 5272 Eudicot View MSA
122049388 5273 Angiosperm View MSA
121345095 5274 Embryophyte View MSA
123424707 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain