Gene : Thecc1EG019158 T. cacao v1.1
Defline:  (1 of 6) K13789 - geranylgeranyl diphosphate synthase, type II (GGPS) Genomic Order:  1215
Name:  ? Thecc1EG019158 Secondary Identifier:  ? PAC:27452321
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5120 Theobroma cacao pathologic  
Tcacao PWY-5910 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019158 0.5kb upstream 0.5kb upstream 2585 true scaffold_4: 20586430-20589014 Theobroma cacao
Thecc1EG019158 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 20586430-20586929 Theobroma cacao
Thecc1EG019158 0.5kb downstream 0.5kb downstream 2585 true scaffold_4: 20586930-20589514 Theobroma cacao
Thecc1EG019158 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 20589015-20589514 Theobroma cacao
Thecc1EG019158 1.0kb upstream 1.0kb upstream 3085 true scaffold_4: 20585930-20589014 Theobroma cacao
Thecc1EG019158 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 20585930-20586929 Theobroma cacao
Thecc1EG019158 1.0kb downstream 1.0kb downstream 3085 true scaffold_4: 20586930-20590014 Theobroma cacao
Thecc1EG019158 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 20589015-20590014 Theobroma cacao
Thecc1EG019158 2.0kb upstream 2.0kb upstream 4085 true scaffold_4: 20584930-20589014 Theobroma cacao
Thecc1EG019158 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 20584930-20586929 Theobroma cacao
Thecc1EG019158 2.0kb downstream 2.0kb downstream 4085 true scaffold_4: 20586930-20591014 Theobroma cacao
Thecc1EG019158 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 20589015-20591014 Theobroma cacao
Thecc1EG019158 5.0kb upstream 5.0kb upstream 7085 true scaffold_4: 20581930-20589014 Theobroma cacao
Thecc1EG019158 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 20581930-20586929 Theobroma cacao
Thecc1EG019158 5.0kb downstream 5.0kb downstream 7085 true scaffold_4: 20586930-20594014 Theobroma cacao
Thecc1EG019158 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 20589015-20594014 Theobroma cacao
Thecc1EG019158 10.0kb upstream 10.0kb upstream 12085 true scaffold_4: 20576930-20589014 Theobroma cacao
Thecc1EG019158 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 20576930-20586929 Theobroma cacao
Thecc1EG019158 10.0kb downstream 10.0kb downstream 12085 true scaffold_4: 20586930-20599014 Theobroma cacao
Thecc1EG019158 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 20589015-20599014 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123842220 5264 Brassicales-Malvales View MSA
124350864 5266 SBM View MSA
124251250 5268 Malvidae View MSA
124051358 5270 Rosid View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain