Gene : Thecc1EG019603 T. cacao v1.1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF18 - RNA POLYMERASE SIGMA FACTOR RPO // SUBFAMILY NOT NAMED Genomic Order:  1490
Name:  ? Thecc1EG019603 Secondary Identifier:  ? PAC:27455739
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019603 0.5kb upstream 0.5kb upstream 7222 true scaffold_4: 23864581-23871802 Theobroma cacao
Thecc1EG019603 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 23871303-23871802 Theobroma cacao
Thecc1EG019603 0.5kb downstream 0.5kb downstream 7222 true scaffold_4: 23864081-23871302 Theobroma cacao
Thecc1EG019603 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 23864081-23864580 Theobroma cacao
Thecc1EG019603 1.0kb upstream 1.0kb upstream 7722 true scaffold_4: 23864581-23872302 Theobroma cacao
Thecc1EG019603 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 23871303-23872302 Theobroma cacao
Thecc1EG019603 1.0kb downstream 1.0kb downstream 7722 true scaffold_4: 23863581-23871302 Theobroma cacao
Thecc1EG019603 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 23863581-23864580 Theobroma cacao
Thecc1EG019603 2.0kb upstream 2.0kb upstream 8722 true scaffold_4: 23864581-23873302 Theobroma cacao
Thecc1EG019603 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 23871303-23873302 Theobroma cacao
Thecc1EG019603 2.0kb downstream 2.0kb downstream 8722 true scaffold_4: 23862581-23871302 Theobroma cacao
Thecc1EG019603 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 23862581-23864580 Theobroma cacao
Thecc1EG019603 5.0kb upstream 5.0kb upstream 11722 true scaffold_4: 23864581-23876302 Theobroma cacao
Thecc1EG019603 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 23871303-23876302 Theobroma cacao
Thecc1EG019603 5.0kb downstream 5.0kb downstream 11722 true scaffold_4: 23859581-23871302 Theobroma cacao
Thecc1EG019603 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 23859581-23864580 Theobroma cacao
Thecc1EG019603 10.0kb upstream 10.0kb upstream 16722 true scaffold_4: 23864581-23881302 Theobroma cacao
Thecc1EG019603 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 23871303-23881302 Theobroma cacao
Thecc1EG019603 10.0kb downstream 10.0kb downstream 16722 true scaffold_4: 23854581-23871302 Theobroma cacao
Thecc1EG019603 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 23854581-23864580 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123839319 5264 Brassicales-Malvales View MSA
124346578 5266 SBM View MSA
124247755 5268 Malvidae View MSA
124065263 5270 Rosid View MSA
123736943 5271 Pentapetalae View MSA
122785665 5272 Eudicot View MSA
122046623 5273 Angiosperm View MSA
121350815 5274 Embryophyte View MSA
123425961 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain