Gene : Thecc1EG019454 T. cacao v1.1
Defline:  (1 of 5) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  1406
Name:  ? Thecc1EG019454 Secondary Identifier:  ? PAC:27454241
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CALVIN-PWY Theobroma cacao pathologic  
Tcacao PHOTOALL-PWY Theobroma cacao pathologic  
Tcacao PWY-5723 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019454 0.5kb upstream 0.5kb upstream 1521 true scaffold_4: 22548151-22549671 Theobroma cacao
Thecc1EG019454 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 22549172-22549671 Theobroma cacao
Thecc1EG019454 0.5kb downstream 0.5kb downstream 1521 true scaffold_4: 22547651-22549171 Theobroma cacao
Thecc1EG019454 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 22547651-22548150 Theobroma cacao
Thecc1EG019454 1.0kb upstream 1.0kb upstream 2021 true scaffold_4: 22548151-22550171 Theobroma cacao
Thecc1EG019454 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 22549172-22550171 Theobroma cacao
Thecc1EG019454 1.0kb downstream 1.0kb downstream 2021 true scaffold_4: 22547151-22549171 Theobroma cacao
Thecc1EG019454 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 22547151-22548150 Theobroma cacao
Thecc1EG019454 2.0kb upstream 2.0kb upstream 3021 true scaffold_4: 22548151-22551171 Theobroma cacao
Thecc1EG019454 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 22549172-22551171 Theobroma cacao
Thecc1EG019454 2.0kb downstream 2.0kb downstream 3021 true scaffold_4: 22546151-22549171 Theobroma cacao
Thecc1EG019454 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 22546151-22548150 Theobroma cacao
Thecc1EG019454 5.0kb upstream 5.0kb upstream 6021 true scaffold_4: 22548151-22554171 Theobroma cacao
Thecc1EG019454 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 22549172-22554171 Theobroma cacao
Thecc1EG019454 5.0kb downstream 5.0kb downstream 6021 true scaffold_4: 22543151-22549171 Theobroma cacao
Thecc1EG019454 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 22543151-22548150 Theobroma cacao
Thecc1EG019454 10.0kb upstream 10.0kb upstream 11021 true scaffold_4: 22548151-22559171 Theobroma cacao
Thecc1EG019454 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 22549172-22559171 Theobroma cacao
Thecc1EG019454 10.0kb downstream 10.0kb downstream 11021 true scaffold_4: 22538151-22549171 Theobroma cacao
Thecc1EG019454 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 22538151-22548150 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain