Gene : Thecc1EG019873 T. cacao v1.1
Defline:  (1 of 1) PTHR23012//PTHR23012:SF94 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  1708
Name:  ? Thecc1EG019873 Secondary Identifier:  ? PAC:27453109
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019873 0.5kb upstream 0.5kb upstream 5835 true scaffold_4: 25479807-25485641 Theobroma cacao
Thecc1EG019873 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 25485142-25485641 Theobroma cacao
Thecc1EG019873 0.5kb downstream 0.5kb downstream 5835 true scaffold_4: 25479307-25485141 Theobroma cacao
Thecc1EG019873 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 25479307-25479806 Theobroma cacao
Thecc1EG019873 1.0kb upstream 1.0kb upstream 6335 true scaffold_4: 25479807-25486141 Theobroma cacao
Thecc1EG019873 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 25485142-25486141 Theobroma cacao
Thecc1EG019873 1.0kb downstream 1.0kb downstream 6335 true scaffold_4: 25478807-25485141 Theobroma cacao
Thecc1EG019873 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 25478807-25479806 Theobroma cacao
Thecc1EG019873 2.0kb upstream 2.0kb upstream 7335 true scaffold_4: 25479807-25487141 Theobroma cacao
Thecc1EG019873 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 25485142-25487141 Theobroma cacao
Thecc1EG019873 2.0kb downstream 2.0kb downstream 7335 true scaffold_4: 25477807-25485141 Theobroma cacao
Thecc1EG019873 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 25477807-25479806 Theobroma cacao
Thecc1EG019873 5.0kb upstream 5.0kb upstream 10335 true scaffold_4: 25479807-25490141 Theobroma cacao
Thecc1EG019873 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 25485142-25490141 Theobroma cacao
Thecc1EG019873 5.0kb downstream 5.0kb downstream 10335 true scaffold_4: 25474807-25485141 Theobroma cacao
Thecc1EG019873 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 25474807-25479806 Theobroma cacao
Thecc1EG019873 10.0kb upstream 10.0kb upstream 15335 true scaffold_4: 25479807-25495141 Theobroma cacao
Thecc1EG019873 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 25485142-25495141 Theobroma cacao
Thecc1EG019873 10.0kb downstream 10.0kb downstream 15335 true scaffold_4: 25469807-25485141 Theobroma cacao
Thecc1EG019873 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 25469807-25479806 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123826251 5264 Brassicales-Malvales View MSA
124348806 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain