Gene : Thecc1EG020141 T. cacao v1.1
Defline:  (1 of 1) PF00665//PF03732//PF07727//PF13976 - Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // GAG-pre-integrase domain (gag_pre-integrs) Genomic Order:  1924
Name:  ? Thecc1EG020141 Secondary Identifier:  ? PAC:27455060
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020141 0.5kb upstream 0.5kb upstream 8608 true scaffold_4: 26897994-26906601 Theobroma cacao
Thecc1EG020141 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 26906102-26906601 Theobroma cacao
Thecc1EG020141 0.5kb downstream 0.5kb downstream 8608 true scaffold_4: 26897494-26906101 Theobroma cacao
Thecc1EG020141 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 26897494-26897993 Theobroma cacao
Thecc1EG020141 1.0kb upstream 1.0kb upstream 9108 true scaffold_4: 26897994-26907101 Theobroma cacao
Thecc1EG020141 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 26906102-26907101 Theobroma cacao
Thecc1EG020141 1.0kb downstream 1.0kb downstream 9108 true scaffold_4: 26896994-26906101 Theobroma cacao
Thecc1EG020141 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 26896994-26897993 Theobroma cacao
Thecc1EG020141 2.0kb upstream 2.0kb upstream 10108 true scaffold_4: 26897994-26908101 Theobroma cacao
Thecc1EG020141 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 26906102-26908101 Theobroma cacao
Thecc1EG020141 2.0kb downstream 2.0kb downstream 10108 true scaffold_4: 26895994-26906101 Theobroma cacao
Thecc1EG020141 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 26895994-26897993 Theobroma cacao
Thecc1EG020141 5.0kb upstream 5.0kb upstream 13108 true scaffold_4: 26897994-26911101 Theobroma cacao
Thecc1EG020141 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 26906102-26911101 Theobroma cacao
Thecc1EG020141 5.0kb downstream 5.0kb downstream 13108 true scaffold_4: 26892994-26906101 Theobroma cacao
Thecc1EG020141 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 26892994-26897993 Theobroma cacao
Thecc1EG020141 10.0kb upstream 10.0kb upstream 18108 true scaffold_4: 26897994-26916101 Theobroma cacao
Thecc1EG020141 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 26906102-26916101 Theobroma cacao
Thecc1EG020141 10.0kb downstream 10.0kb downstream 18108 true scaffold_4: 26887994-26906101 Theobroma cacao
Thecc1EG020141 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 26887994-26897993 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782283 5273 Angiosperm View MSA
123823895 5264 Brassicales-Malvales View MSA
124319948 5266 SBM View MSA
124168445 5268 Malvidae View MSA
124038233 5270 Rosid View MSA
123752407 5271 Pentapetalae View MSA
122774538 5272 Eudicot View MSA
121053815 5274 Embryophyte View MSA
123093823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain