Gene : Thecc1EG020384 T. cacao v1.1
Defline:  (1 of 6) K00660 - chalcone synthase (CHS) Genomic Order:  2137
Name:  ? Thecc1EG020384 Secondary Identifier:  ? PAC:27455906
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY1F-FLAVSYN Theobroma cacao pathologic  
Tcacao PWY-6787 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020384 0.5kb upstream 0.5kb upstream 3796 true scaffold_4: 28274427-28278222 Theobroma cacao
Thecc1EG020384 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 28277723-28278222 Theobroma cacao
Thecc1EG020384 0.5kb downstream 0.5kb downstream 3796 true scaffold_4: 28273927-28277722 Theobroma cacao
Thecc1EG020384 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 28273927-28274426 Theobroma cacao
Thecc1EG020384 1.0kb upstream 1.0kb upstream 4296 true scaffold_4: 28274427-28278722 Theobroma cacao
Thecc1EG020384 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 28277723-28278722 Theobroma cacao
Thecc1EG020384 1.0kb downstream 1.0kb downstream 4296 true scaffold_4: 28273427-28277722 Theobroma cacao
Thecc1EG020384 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 28273427-28274426 Theobroma cacao
Thecc1EG020384 2.0kb upstream 2.0kb upstream 5296 true scaffold_4: 28274427-28279722 Theobroma cacao
Thecc1EG020384 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 28277723-28279722 Theobroma cacao
Thecc1EG020384 2.0kb downstream 2.0kb downstream 5296 true scaffold_4: 28272427-28277722 Theobroma cacao
Thecc1EG020384 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 28272427-28274426 Theobroma cacao
Thecc1EG020384 5.0kb upstream 5.0kb upstream 8296 true scaffold_4: 28274427-28282722 Theobroma cacao
Thecc1EG020384 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 28277723-28282722 Theobroma cacao
Thecc1EG020384 5.0kb downstream 5.0kb downstream 8296 true scaffold_4: 28269427-28277722 Theobroma cacao
Thecc1EG020384 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 28269427-28274426 Theobroma cacao
Thecc1EG020384 10.0kb upstream 10.0kb upstream 13296 true scaffold_4: 28274427-28287722 Theobroma cacao
Thecc1EG020384 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 28277723-28287722 Theobroma cacao
Thecc1EG020384 10.0kb downstream 10.0kb downstream 13296 true scaffold_4: 28264427-28277722 Theobroma cacao
Thecc1EG020384 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 28264427-28274426 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840388 5264 Brassicales-Malvales View MSA
124351590 5266 SBM View MSA
124254080 5268 Malvidae View MSA
124069836 5270 Rosid View MSA
123744406 5271 Pentapetalae View MSA
122790395 5272 Eudicot View MSA
122051180 5273 Angiosperm View MSA
121350627 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain