Gene : Thecc1EG020629 T. cacao v1.1
Defline:  (1 of 2) PTHR10314//PTHR10314:SF101 - SER/THR DEHYDRATASE, TRP SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  2351
Name:  ? Thecc1EG020629 Secondary Identifier:  ? PAC:27452718
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao CYSTSYN-PWY Theobroma cacao pathologic  
Tcacao PWY-6936 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020629 0.5kb upstream 0.5kb upstream 3980 true scaffold_4: 29504383-29508362 Theobroma cacao
Thecc1EG020629 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 29504383-29504882 Theobroma cacao
Thecc1EG020629 0.5kb downstream 0.5kb downstream 3980 true scaffold_4: 29504883-29508862 Theobroma cacao
Thecc1EG020629 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 29508363-29508862 Theobroma cacao
Thecc1EG020629 1.0kb upstream 1.0kb upstream 4480 true scaffold_4: 29503883-29508362 Theobroma cacao
Thecc1EG020629 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 29503883-29504882 Theobroma cacao
Thecc1EG020629 1.0kb downstream 1.0kb downstream 4480 true scaffold_4: 29504883-29509362 Theobroma cacao
Thecc1EG020629 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 29508363-29509362 Theobroma cacao
Thecc1EG020629 2.0kb upstream 2.0kb upstream 5480 true scaffold_4: 29502883-29508362 Theobroma cacao
Thecc1EG020629 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 29502883-29504882 Theobroma cacao
Thecc1EG020629 2.0kb downstream 2.0kb downstream 5480 true scaffold_4: 29504883-29510362 Theobroma cacao
Thecc1EG020629 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 29508363-29510362 Theobroma cacao
Thecc1EG020629 5.0kb upstream 5.0kb upstream 8480 true scaffold_4: 29499883-29508362 Theobroma cacao
Thecc1EG020629 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 29499883-29504882 Theobroma cacao
Thecc1EG020629 5.0kb downstream 5.0kb downstream 8480 true scaffold_4: 29504883-29513362 Theobroma cacao
Thecc1EG020629 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 29508363-29513362 Theobroma cacao
Thecc1EG020629 10.0kb upstream 10.0kb upstream 13480 true scaffold_4: 29494883-29508362 Theobroma cacao
Thecc1EG020629 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 29494883-29504882 Theobroma cacao
Thecc1EG020629 10.0kb downstream 10.0kb downstream 13480 true scaffold_4: 29504883-29518362 Theobroma cacao
Thecc1EG020629 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 29508363-29518362 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123836685 5264 Brassicales-Malvales View MSA
124342961 5266 SBM View MSA
124246015 5268 Malvidae View MSA
124073485 5270 Rosid View MSA
123750353 5271 Pentapetalae View MSA
122787082 5272 Eudicot View MSA
122044204 5273 Angiosperm View MSA
121350970 5274 Embryophyte View MSA
123424805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain