Gene : Thecc1EG021795 T. cacao v1.1
Defline:  (1 of 1) PTHR11709:SF9 - LACCASE-7-RELATED Genomic Order:  248
Name:  ? Thecc1EG021795 Secondary Identifier:  ? PAC:27424056
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-5466 Theobroma cacao pathologic  
Tcacao PWY-6824 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG021795 0.5kb upstream 0.5kb upstream 10453 true scaffold_5: 1230527-1240979 Theobroma cacao
Thecc1EG021795 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1240480-1240979 Theobroma cacao
Thecc1EG021795 0.5kb downstream 0.5kb downstream 10453 true scaffold_5: 1230027-1240479 Theobroma cacao
Thecc1EG021795 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1230027-1230526 Theobroma cacao
Thecc1EG021795 1.0kb upstream 1.0kb upstream 10953 true scaffold_5: 1230527-1241479 Theobroma cacao
Thecc1EG021795 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1240480-1241479 Theobroma cacao
Thecc1EG021795 1.0kb downstream 1.0kb downstream 10953 true scaffold_5: 1229527-1240479 Theobroma cacao
Thecc1EG021795 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1229527-1230526 Theobroma cacao
Thecc1EG021795 2.0kb upstream 2.0kb upstream 11953 true scaffold_5: 1230527-1242479 Theobroma cacao
Thecc1EG021795 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1240480-1242479 Theobroma cacao
Thecc1EG021795 2.0kb downstream 2.0kb downstream 11953 true scaffold_5: 1228527-1240479 Theobroma cacao
Thecc1EG021795 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1228527-1230526 Theobroma cacao
Thecc1EG021795 5.0kb upstream 5.0kb upstream 14953 true scaffold_5: 1230527-1245479 Theobroma cacao
Thecc1EG021795 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1240480-1245479 Theobroma cacao
Thecc1EG021795 5.0kb downstream 5.0kb downstream 14953 true scaffold_5: 1225527-1240479 Theobroma cacao
Thecc1EG021795 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1225527-1230526 Theobroma cacao
Thecc1EG021795 10.0kb upstream 10.0kb upstream 19953 true scaffold_5: 1230527-1250479 Theobroma cacao
Thecc1EG021795 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1240480-1250479 Theobroma cacao
Thecc1EG021795 10.0kb downstream 10.0kb downstream 19953 true scaffold_5: 1220527-1240479 Theobroma cacao
Thecc1EG021795 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1220527-1230526 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123820074 5264 Brassicales-Malvales Singleton cluster - no MSA
124351381 5266 SBM View MSA
124241371 5268 Malvidae View MSA
124063010 5270 Rosid View MSA
123744163 5271 Pentapetalae View MSA
122787244 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain