Gene : Thecc1EG022053 T. cacao v1.1
Defline:  (1 of 1) PTHR22763//PTHR22763:SF20 - RING ZINC FINGER PROTEIN // E3 LIGASE SHOOT GRAVITROPISM 9 Genomic Order:  484
Name:  ? Thecc1EG022053 Secondary Identifier:  ? PAC:27421308
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7511 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022053 0.5kb upstream 0.5kb upstream 1750 true scaffold_5: 2388734-2390483 Theobroma cacao
Thecc1EG022053 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2388734-2389233 Theobroma cacao
Thecc1EG022053 0.5kb downstream 0.5kb downstream 1750 true scaffold_5: 2389234-2390983 Theobroma cacao
Thecc1EG022053 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2390484-2390983 Theobroma cacao
Thecc1EG022053 1.0kb upstream 1.0kb upstream 2250 true scaffold_5: 2388234-2390483 Theobroma cacao
Thecc1EG022053 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2388234-2389233 Theobroma cacao
Thecc1EG022053 1.0kb downstream 1.0kb downstream 2250 true scaffold_5: 2389234-2391483 Theobroma cacao
Thecc1EG022053 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2390484-2391483 Theobroma cacao
Thecc1EG022053 2.0kb upstream 2.0kb upstream 3250 true scaffold_5: 2387234-2390483 Theobroma cacao
Thecc1EG022053 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2387234-2389233 Theobroma cacao
Thecc1EG022053 2.0kb downstream 2.0kb downstream 3250 true scaffold_5: 2389234-2392483 Theobroma cacao
Thecc1EG022053 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2390484-2392483 Theobroma cacao
Thecc1EG022053 5.0kb upstream 5.0kb upstream 6250 true scaffold_5: 2384234-2390483 Theobroma cacao
Thecc1EG022053 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2384234-2389233 Theobroma cacao
Thecc1EG022053 5.0kb downstream 5.0kb downstream 6250 true scaffold_5: 2389234-2395483 Theobroma cacao
Thecc1EG022053 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2390484-2395483 Theobroma cacao
Thecc1EG022053 10.0kb upstream 10.0kb upstream 11250 true scaffold_5: 2379234-2390483 Theobroma cacao
Thecc1EG022053 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2379234-2389233 Theobroma cacao
Thecc1EG022053 10.0kb downstream 10.0kb downstream 11250 true scaffold_5: 2389234-2400483 Theobroma cacao
Thecc1EG022053 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2390484-2400483 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827606 5264 Brassicales-Malvales View MSA
124338150 5266 SBM View MSA
124238693 5268 Malvidae View MSA
124063596 5270 Rosid View MSA
123746607 5271 Pentapetalae View MSA
122791525 5272 Eudicot View MSA
122041904 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121309901 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain