Gene : Pavir.6KG253300 P. virgatum v4.1
Defline:  (1 of 3) 5.5.1.19 - Lycopene beta-cyclase Genomic Order:  2275
Name:  ? Pavir.6KG253300 Secondary Identifier:  ? PAC:37692777
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum CAROTENOID-PWY Panicum virgatum pathologic  
Pvirgatum PWY-5943 Panicum virgatum pathologic  
Pvirgatum PWY-5947 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.6KG253300 0.5kb upstream 0.5kb upstream 12345 true Chr06K: 51009514-51021858 Panicum virgatum
Pavir.6KG253300 0.5kb upstream 0.5kb upstream 500 false Chr06K: 51009514-51010013 Panicum virgatum
Pavir.6KG253300 0.5kb downstream 0.5kb downstream 12345 true Chr06K: 51010014-51022358 Panicum virgatum
Pavir.6KG253300 0.5kb downstream 0.5kb downstream 500 false Chr06K: 51021859-51022358 Panicum virgatum
Pavir.6KG253300 1.0kb upstream 1.0kb upstream 12845 true Chr06K: 51009014-51021858 Panicum virgatum
Pavir.6KG253300 1.0kb upstream 1.0kb upstream 1000 false Chr06K: 51009014-51010013 Panicum virgatum
Pavir.6KG253300 1.0kb downstream 1.0kb downstream 12845 true Chr06K: 51010014-51022858 Panicum virgatum
Pavir.6KG253300 1.0kb downstream 1.0kb downstream 1000 false Chr06K: 51021859-51022858 Panicum virgatum
Pavir.6KG253300 2.0kb upstream 2.0kb upstream 13845 true Chr06K: 51008014-51021858 Panicum virgatum
Pavir.6KG253300 2.0kb upstream 2.0kb upstream 2000 false Chr06K: 51008014-51010013 Panicum virgatum
Pavir.6KG253300 2.0kb downstream 2.0kb downstream 13845 true Chr06K: 51010014-51023858 Panicum virgatum
Pavir.6KG253300 2.0kb downstream 2.0kb downstream 2000 false Chr06K: 51021859-51023858 Panicum virgatum
Pavir.6KG253300 5.0kb upstream 5.0kb upstream 16845 true Chr06K: 51005014-51021858 Panicum virgatum
Pavir.6KG253300 5.0kb upstream 5.0kb upstream 5000 false Chr06K: 51005014-51010013 Panicum virgatum
Pavir.6KG253300 5.0kb downstream 5.0kb downstream 16845 true Chr06K: 51010014-51026858 Panicum virgatum
Pavir.6KG253300 5.0kb downstream 5.0kb downstream 5000 false Chr06K: 51021859-51026858 Panicum virgatum
Pavir.6KG253300 10.0kb upstream 10.0kb upstream 21845 true Chr06K: 51000014-51021858 Panicum virgatum
Pavir.6KG253300 10.0kb upstream 10.0kb upstream 10000 false Chr06K: 51000014-51010013 Panicum virgatum
Pavir.6KG253300 10.0kb downstream 10.0kb downstream 21845 true Chr06K: 51010014-51031858 Panicum virgatum
Pavir.6KG253300 10.0kb downstream 10.0kb downstream 10000 false Chr06K: 51021859-51031858 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187284 5267 Panicoideae View MSA
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain