Gene : Thecc1EG022399 T. cacao v1.1
Defline:  (1 of 1) 2.4.99.12 - Lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase / Lipid IV(A) KDO transferase Genomic Order:  757
Name:  ? Thecc1EG022399 Secondary Identifier:  ? PAC:27423221
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao KDOSYN-PWY Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG022399 0.5kb upstream 0.5kb upstream 12989 true scaffold_5: 4326074-4339062 Theobroma cacao
Thecc1EG022399 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4338563-4339062 Theobroma cacao
Thecc1EG022399 0.5kb downstream 0.5kb downstream 12989 true scaffold_5: 4325574-4338562 Theobroma cacao
Thecc1EG022399 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4325574-4326073 Theobroma cacao
Thecc1EG022399 1.0kb upstream 1.0kb upstream 13489 true scaffold_5: 4326074-4339562 Theobroma cacao
Thecc1EG022399 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4338563-4339562 Theobroma cacao
Thecc1EG022399 1.0kb downstream 1.0kb downstream 13489 true scaffold_5: 4325074-4338562 Theobroma cacao
Thecc1EG022399 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4325074-4326073 Theobroma cacao
Thecc1EG022399 2.0kb upstream 2.0kb upstream 14489 true scaffold_5: 4326074-4340562 Theobroma cacao
Thecc1EG022399 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4338563-4340562 Theobroma cacao
Thecc1EG022399 2.0kb downstream 2.0kb downstream 14489 true scaffold_5: 4324074-4338562 Theobroma cacao
Thecc1EG022399 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4324074-4326073 Theobroma cacao
Thecc1EG022399 5.0kb upstream 5.0kb upstream 17489 true scaffold_5: 4326074-4343562 Theobroma cacao
Thecc1EG022399 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4338563-4343562 Theobroma cacao
Thecc1EG022399 5.0kb downstream 5.0kb downstream 17489 true scaffold_5: 4321074-4338562 Theobroma cacao
Thecc1EG022399 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4321074-4326073 Theobroma cacao
Thecc1EG022399 10.0kb upstream 10.0kb upstream 22489 true scaffold_5: 4326074-4348562 Theobroma cacao
Thecc1EG022399 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4338563-4348562 Theobroma cacao
Thecc1EG022399 10.0kb downstream 10.0kb downstream 22489 true scaffold_5: 4316074-4338562 Theobroma cacao
Thecc1EG022399 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4316074-4326073 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123828711 5264 Brassicales-Malvales View MSA
124321549 5266 SBM View MSA
124242327 5268 Malvidae View MSA
124064068 5270 Rosid View MSA
123737995 5271 Pentapetalae View MSA
122793703 5272 Eudicot View MSA
122042607 5273 Angiosperm View MSA
121344444 5274 Embryophyte View MSA
123380045 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain