Gene : Thecc1EG023189 T. cacao v1.1
Defline:  (1 of 1) PTHR31642//PTHR31642:SF40 - FAMILY NOT NAMED // DUAL TRANSCRIPTION UNIT AND ALTERNATIVE SPLICING PROTEIN GLAUCE Genomic Order:  1097
Name:  ? Thecc1EG023189 Secondary Identifier:  ? PAC:27424355
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-7120 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023189 0.5kb upstream 0.5kb upstream 4152 true scaffold_5: 11471556-11475707 Theobroma cacao
Thecc1EG023189 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11471556-11472055 Theobroma cacao
Thecc1EG023189 0.5kb downstream 0.5kb downstream 4152 true scaffold_5: 11472056-11476207 Theobroma cacao
Thecc1EG023189 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11475708-11476207 Theobroma cacao
Thecc1EG023189 1.0kb upstream 1.0kb upstream 4652 true scaffold_5: 11471056-11475707 Theobroma cacao
Thecc1EG023189 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11471056-11472055 Theobroma cacao
Thecc1EG023189 1.0kb downstream 1.0kb downstream 4652 true scaffold_5: 11472056-11476707 Theobroma cacao
Thecc1EG023189 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11475708-11476707 Theobroma cacao
Thecc1EG023189 2.0kb upstream 2.0kb upstream 5652 true scaffold_5: 11470056-11475707 Theobroma cacao
Thecc1EG023189 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11470056-11472055 Theobroma cacao
Thecc1EG023189 2.0kb downstream 2.0kb downstream 5652 true scaffold_5: 11472056-11477707 Theobroma cacao
Thecc1EG023189 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11475708-11477707 Theobroma cacao
Thecc1EG023189 5.0kb upstream 5.0kb upstream 8652 true scaffold_5: 11467056-11475707 Theobroma cacao
Thecc1EG023189 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11467056-11472055 Theobroma cacao
Thecc1EG023189 5.0kb downstream 5.0kb downstream 8652 true scaffold_5: 11472056-11480707 Theobroma cacao
Thecc1EG023189 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11475708-11480707 Theobroma cacao
Thecc1EG023189 10.0kb upstream 10.0kb upstream 13652 true scaffold_5: 11462056-11475707 Theobroma cacao
Thecc1EG023189 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11462056-11472055 Theobroma cacao
Thecc1EG023189 10.0kb downstream 10.0kb downstream 13652 true scaffold_5: 11472056-11485707 Theobroma cacao
Thecc1EG023189 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11475708-11485707 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123827879 5264 Brassicales-Malvales View MSA
124345687 5266 SBM View MSA
124243245 5268 Malvidae View MSA
124063642 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain