Gene : Pavir.5NG353400 P. virgatum v4.1
Defline:  (1 of 4) K13832 - 3-dehydroquinate dehydratase / shikimate dehydrogenase (aroDE, DHQ-SDH) Genomic Order:  2644
Name:  ? Pavir.5NG353400 Secondary Identifier:  ? PAC:37574963
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum ARO-PWY Panicum virgatum pathologic  
Pvirgatum PWY-6163 Panicum virgatum pathologic  

Genomics

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Expression

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG353400 0.5kb upstream 0.5kb upstream 28974 true Chr05N: 46775908-46804881 Panicum virgatum
Pavir.5NG353400 0.5kb upstream 0.5kb upstream 500 false Chr05N: 46804382-46804881 Panicum virgatum
Pavir.5NG353400 0.5kb downstream 0.5kb downstream 28974 true Chr05N: 46775408-46804381 Panicum virgatum
Pavir.5NG353400 0.5kb downstream 0.5kb downstream 500 false Chr05N: 46775408-46775907 Panicum virgatum
Pavir.5NG353400 1.0kb upstream 1.0kb upstream 29474 true Chr05N: 46775908-46805381 Panicum virgatum
Pavir.5NG353400 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 46804382-46805381 Panicum virgatum
Pavir.5NG353400 1.0kb downstream 1.0kb downstream 29474 true Chr05N: 46774908-46804381 Panicum virgatum
Pavir.5NG353400 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 46774908-46775907 Panicum virgatum
Pavir.5NG353400 2.0kb upstream 2.0kb upstream 30474 true Chr05N: 46775908-46806381 Panicum virgatum
Pavir.5NG353400 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 46804382-46806381 Panicum virgatum
Pavir.5NG353400 2.0kb downstream 2.0kb downstream 30474 true Chr05N: 46773908-46804381 Panicum virgatum
Pavir.5NG353400 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 46773908-46775907 Panicum virgatum
Pavir.5NG353400 5.0kb upstream 5.0kb upstream 33474 true Chr05N: 46775908-46809381 Panicum virgatum
Pavir.5NG353400 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 46804382-46809381 Panicum virgatum
Pavir.5NG353400 5.0kb downstream 5.0kb downstream 33474 true Chr05N: 46770908-46804381 Panicum virgatum
Pavir.5NG353400 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 46770908-46775907 Panicum virgatum
Pavir.5NG353400 10.0kb upstream 10.0kb upstream 38474 true Chr05N: 46775908-46814381 Panicum virgatum
Pavir.5NG353400 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 46804382-46814381 Panicum virgatum
Pavir.5NG353400 10.0kb downstream 10.0kb downstream 38474 true Chr05N: 46765908-46804381 Panicum virgatum
Pavir.5NG353400 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 46765908-46775907 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189124 5267 Panicoideae View MSA
124570353 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain