Gene : Pavir.5NG395900 P. virgatum v4.1
Defline:  (1 of 3) K04716 - sphingosine-1-phosphate phosphatase 1 (SGPP1) Genomic Order:  3026
Name:  ? Pavir.5NG395900 Secondary Identifier:  ? PAC:37577420
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum TRIGLSYN-PWY Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5NG395900 0.5kb upstream 0.5kb upstream 3067 true Chr05N: 55929426-55932492 Panicum virgatum
Pavir.5NG395900 0.5kb upstream 0.5kb upstream 500 false Chr05N: 55931993-55932492 Panicum virgatum
Pavir.5NG395900 0.5kb downstream 0.5kb downstream 3067 true Chr05N: 55928926-55931992 Panicum virgatum
Pavir.5NG395900 0.5kb downstream 0.5kb downstream 500 false Chr05N: 55928926-55929425 Panicum virgatum
Pavir.5NG395900 1.0kb upstream 1.0kb upstream 3567 true Chr05N: 55929426-55932992 Panicum virgatum
Pavir.5NG395900 1.0kb upstream 1.0kb upstream 1000 false Chr05N: 55931993-55932992 Panicum virgatum
Pavir.5NG395900 1.0kb downstream 1.0kb downstream 3567 true Chr05N: 55928426-55931992 Panicum virgatum
Pavir.5NG395900 1.0kb downstream 1.0kb downstream 1000 false Chr05N: 55928426-55929425 Panicum virgatum
Pavir.5NG395900 2.0kb upstream 2.0kb upstream 4567 true Chr05N: 55929426-55933992 Panicum virgatum
Pavir.5NG395900 2.0kb upstream 2.0kb upstream 2000 false Chr05N: 55931993-55933992 Panicum virgatum
Pavir.5NG395900 2.0kb downstream 2.0kb downstream 4567 true Chr05N: 55927426-55931992 Panicum virgatum
Pavir.5NG395900 2.0kb downstream 2.0kb downstream 2000 false Chr05N: 55927426-55929425 Panicum virgatum
Pavir.5NG395900 5.0kb upstream 5.0kb upstream 7567 true Chr05N: 55929426-55936992 Panicum virgatum
Pavir.5NG395900 5.0kb upstream 5.0kb upstream 5000 false Chr05N: 55931993-55936992 Panicum virgatum
Pavir.5NG395900 5.0kb downstream 5.0kb downstream 7567 true Chr05N: 55924426-55931992 Panicum virgatum
Pavir.5NG395900 5.0kb downstream 5.0kb downstream 5000 false Chr05N: 55924426-55929425 Panicum virgatum
Pavir.5NG395900 10.0kb upstream 10.0kb upstream 12567 true Chr05N: 55929426-55941992 Panicum virgatum
Pavir.5NG395900 10.0kb upstream 10.0kb upstream 10000 false Chr05N: 55931993-55941992 Panicum virgatum
Pavir.5NG395900 10.0kb downstream 10.0kb downstream 12567 true Chr05N: 55919426-55931992 Panicum virgatum
Pavir.5NG395900 10.0kb downstream 10.0kb downstream 10000 false Chr05N: 55919426-55929425 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197916 5267 Panicoideae View MSA
124580296 5269 Grass View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain