Gene : Pavir.6NG019600 P. virgatum v4.1
Defline:  (1 of 4) PTHR10836//PTHR10836:SF58 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  173
Name:  ? Pavir.6NG019600 Secondary Identifier:  ? PAC:37648659
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum ANAEROFRUCAT-PWY Panicum virgatum pathologic  
Pvirgatum ANAGLYCOLYSIS-PWY Panicum virgatum pathologic  
Pvirgatum GLUCONEO-PWY Panicum virgatum pathologic  
Pvirgatum PWY-1042 Panicum virgatum pathologic  
Pvirgatum PWY-5464 Panicum virgatum pathologic  
Pvirgatum SUCSYN-PWY Panicum virgatum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.6NG019600 0.5kb upstream 0.5kb upstream 5167 true Chr06N: 2300457-2305623 Panicum virgatum
Pavir.6NG019600 0.5kb upstream 0.5kb upstream 500 false Chr06N: 2300457-2300956 Panicum virgatum
Pavir.6NG019600 0.5kb downstream 0.5kb downstream 5167 true Chr06N: 2300957-2306123 Panicum virgatum
Pavir.6NG019600 0.5kb downstream 0.5kb downstream 500 false Chr06N: 2305624-2306123 Panicum virgatum
Pavir.6NG019600 1.0kb upstream 1.0kb upstream 5667 true Chr06N: 2299957-2305623 Panicum virgatum
Pavir.6NG019600 1.0kb upstream 1.0kb upstream 1000 false Chr06N: 2299957-2300956 Panicum virgatum
Pavir.6NG019600 1.0kb downstream 1.0kb downstream 5667 true Chr06N: 2300957-2306623 Panicum virgatum
Pavir.6NG019600 1.0kb downstream 1.0kb downstream 1000 false Chr06N: 2305624-2306623 Panicum virgatum
Pavir.6NG019600 2.0kb upstream 2.0kb upstream 6667 true Chr06N: 2298957-2305623 Panicum virgatum
Pavir.6NG019600 2.0kb upstream 2.0kb upstream 2000 false Chr06N: 2298957-2300956 Panicum virgatum
Pavir.6NG019600 2.0kb downstream 2.0kb downstream 6667 true Chr06N: 2300957-2307623 Panicum virgatum
Pavir.6NG019600 2.0kb downstream 2.0kb downstream 2000 false Chr06N: 2305624-2307623 Panicum virgatum
Pavir.6NG019600 5.0kb upstream 5.0kb upstream 9667 true Chr06N: 2295957-2305623 Panicum virgatum
Pavir.6NG019600 5.0kb upstream 5.0kb upstream 5000 false Chr06N: 2295957-2300956 Panicum virgatum
Pavir.6NG019600 5.0kb downstream 5.0kb downstream 9667 true Chr06N: 2300957-2310623 Panicum virgatum
Pavir.6NG019600 5.0kb downstream 5.0kb downstream 5000 false Chr06N: 2305624-2310623 Panicum virgatum
Pavir.6NG019600 10.0kb upstream 10.0kb upstream 14667 true Chr06N: 2290957-2305623 Panicum virgatum
Pavir.6NG019600 10.0kb upstream 10.0kb upstream 10000 false Chr06N: 2290957-2300956 Panicum virgatum
Pavir.6NG019600 10.0kb downstream 10.0kb downstream 14667 true Chr06N: 2300957-2315623 Panicum virgatum
Pavir.6NG019600 10.0kb downstream 10.0kb downstream 10000 false Chr06N: 2305624-2315623 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122099069 5267 Panicoideae Singleton cluster - no MSA
124589376 5269 Grass View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain