Gene : Thecc1EG024715 T. cacao v1.1
Defline:  (1 of 2) PTHR31375//PTHR31375:SF3 - FAMILY NOT NAMED // POLYGALACTURONASE ADPG1-RELATED Genomic Order:  1601
Name:  ? Thecc1EG024715 Secondary Identifier:  ? PAC:27422064
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tcacao PWY-1081 Theobroma cacao pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024715 0.5kb upstream 0.5kb upstream 5711 true scaffold_5: 28039700-28045410 Theobroma cacao
Thecc1EG024715 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28044911-28045410 Theobroma cacao
Thecc1EG024715 0.5kb downstream 0.5kb downstream 5711 true scaffold_5: 28039200-28044910 Theobroma cacao
Thecc1EG024715 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28039200-28039699 Theobroma cacao
Thecc1EG024715 1.0kb upstream 1.0kb upstream 6211 true scaffold_5: 28039700-28045910 Theobroma cacao
Thecc1EG024715 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28044911-28045910 Theobroma cacao
Thecc1EG024715 1.0kb downstream 1.0kb downstream 6211 true scaffold_5: 28038700-28044910 Theobroma cacao
Thecc1EG024715 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28038700-28039699 Theobroma cacao
Thecc1EG024715 2.0kb upstream 2.0kb upstream 7211 true scaffold_5: 28039700-28046910 Theobroma cacao
Thecc1EG024715 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28044911-28046910 Theobroma cacao
Thecc1EG024715 2.0kb downstream 2.0kb downstream 7211 true scaffold_5: 28037700-28044910 Theobroma cacao
Thecc1EG024715 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28037700-28039699 Theobroma cacao
Thecc1EG024715 5.0kb upstream 5.0kb upstream 10211 true scaffold_5: 28039700-28049910 Theobroma cacao
Thecc1EG024715 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28044911-28049910 Theobroma cacao
Thecc1EG024715 5.0kb downstream 5.0kb downstream 10211 true scaffold_5: 28034700-28044910 Theobroma cacao
Thecc1EG024715 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28034700-28039699 Theobroma cacao
Thecc1EG024715 10.0kb upstream 10.0kb upstream 15211 true scaffold_5: 28039700-28054910 Theobroma cacao
Thecc1EG024715 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28044911-28054910 Theobroma cacao
Thecc1EG024715 10.0kb downstream 10.0kb downstream 15211 true scaffold_5: 28029700-28044910 Theobroma cacao
Thecc1EG024715 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28029700-28039699 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838007 5264 Brassicales-Malvales View MSA
124346929 5266 SBM View MSA
124251426 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain