Gene : Pavir.3KG446900 P. virgatum v4.1
Defline:  (1 of 2) PTHR21089:SF1 - BIFUNCTIONAL 3-DEHYDROQUINATE DEHYDRATASE/SHIKIMATE DEHYDROGENASE, CHLOROPLASTIC Genomic Order:  4307
Name:  ? Pavir.3KG446900 Secondary Identifier:  ? PAC:37593333
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvirgatum ARO-PWY Panicum virgatum pathologic  
Pvirgatum PWY-6163 Panicum virgatum pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.3KG446900 0.5kb upstream 0.5kb upstream 5971 true Chr03K: 60770121-60776091 Panicum virgatum
Pavir.3KG446900 0.5kb upstream 0.5kb upstream 500 false Chr03K: 60775592-60776091 Panicum virgatum
Pavir.3KG446900 0.5kb downstream 0.5kb downstream 5971 true Chr03K: 60769621-60775591 Panicum virgatum
Pavir.3KG446900 0.5kb downstream 0.5kb downstream 500 false Chr03K: 60769621-60770120 Panicum virgatum
Pavir.3KG446900 1.0kb upstream 1.0kb upstream 6471 true Chr03K: 60770121-60776591 Panicum virgatum
Pavir.3KG446900 1.0kb upstream 1.0kb upstream 1000 false Chr03K: 60775592-60776591 Panicum virgatum
Pavir.3KG446900 1.0kb downstream 1.0kb downstream 6471 true Chr03K: 60769121-60775591 Panicum virgatum
Pavir.3KG446900 1.0kb downstream 1.0kb downstream 1000 false Chr03K: 60769121-60770120 Panicum virgatum
Pavir.3KG446900 2.0kb upstream 2.0kb upstream 7471 true Chr03K: 60770121-60777591 Panicum virgatum
Pavir.3KG446900 2.0kb upstream 2.0kb upstream 2000 false Chr03K: 60775592-60777591 Panicum virgatum
Pavir.3KG446900 2.0kb downstream 2.0kb downstream 7471 true Chr03K: 60768121-60775591 Panicum virgatum
Pavir.3KG446900 2.0kb downstream 2.0kb downstream 2000 false Chr03K: 60768121-60770120 Panicum virgatum
Pavir.3KG446900 5.0kb upstream 5.0kb upstream 10471 true Chr03K: 60770121-60780591 Panicum virgatum
Pavir.3KG446900 5.0kb upstream 5.0kb upstream 5000 false Chr03K: 60775592-60780591 Panicum virgatum
Pavir.3KG446900 5.0kb downstream 5.0kb downstream 10471 true Chr03K: 60765121-60775591 Panicum virgatum
Pavir.3KG446900 5.0kb downstream 5.0kb downstream 5000 false Chr03K: 60765121-60770120 Panicum virgatum
Pavir.3KG446900 10.0kb upstream 10.0kb upstream 15471 true Chr03K: 60770121-60785591 Panicum virgatum
Pavir.3KG446900 10.0kb upstream 10.0kb upstream 10000 false Chr03K: 60775592-60785591 Panicum virgatum
Pavir.3KG446900 10.0kb downstream 10.0kb downstream 15471 true Chr03K: 60760121-60775591 Panicum virgatum
Pavir.3KG446900 10.0kb downstream 10.0kb downstream 10000 false Chr03K: 60760121-60770120 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122083800 5267 Panicoideae Singleton cluster - no MSA
124583290 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain