Gene : Pavir.5KG002400 P. virgatum v4.1
Defline:  (1 of 1) K03040 - DNA-directed RNA polymerase subunit alpha (rpoA) Genomic Order:  46
Name:  ? Pavir.5KG002400 Secondary Identifier:  ? PAC:37638339
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.5KG002400 0.5kb upstream 0.5kb upstream 1444 true Chr05K: 707226-708669 Panicum virgatum
Pavir.5KG002400 0.5kb upstream 0.5kb upstream 500 false Chr05K: 708170-708669 Panicum virgatum
Pavir.5KG002400 0.5kb downstream 0.5kb downstream 1444 true Chr05K: 706726-708169 Panicum virgatum
Pavir.5KG002400 0.5kb downstream 0.5kb downstream 500 false Chr05K: 706726-707225 Panicum virgatum
Pavir.5KG002400 1.0kb upstream 1.0kb upstream 1944 true Chr05K: 707226-709169 Panicum virgatum
Pavir.5KG002400 1.0kb upstream 1.0kb upstream 1000 false Chr05K: 708170-709169 Panicum virgatum
Pavir.5KG002400 1.0kb downstream 1.0kb downstream 1944 true Chr05K: 706226-708169 Panicum virgatum
Pavir.5KG002400 1.0kb downstream 1.0kb downstream 1000 false Chr05K: 706226-707225 Panicum virgatum
Pavir.5KG002400 2.0kb upstream 2.0kb upstream 2944 true Chr05K: 707226-710169 Panicum virgatum
Pavir.5KG002400 2.0kb upstream 2.0kb upstream 2000 false Chr05K: 708170-710169 Panicum virgatum
Pavir.5KG002400 2.0kb downstream 2.0kb downstream 2944 true Chr05K: 705226-708169 Panicum virgatum
Pavir.5KG002400 2.0kb downstream 2.0kb downstream 2000 false Chr05K: 705226-707225 Panicum virgatum
Pavir.5KG002400 5.0kb upstream 5.0kb upstream 5944 true Chr05K: 707226-713169 Panicum virgatum
Pavir.5KG002400 5.0kb upstream 5.0kb upstream 5000 false Chr05K: 708170-713169 Panicum virgatum
Pavir.5KG002400 5.0kb downstream 5.0kb downstream 5944 true Chr05K: 702226-708169 Panicum virgatum
Pavir.5KG002400 5.0kb downstream 5.0kb downstream 5000 false Chr05K: 702226-707225 Panicum virgatum
Pavir.5KG002400 10.0kb upstream 10.0kb upstream 10944 true Chr05K: 707226-718169 Panicum virgatum
Pavir.5KG002400 10.0kb upstream 10.0kb upstream 10000 false Chr05K: 708170-718169 Panicum virgatum
Pavir.5KG002400 10.0kb downstream 10.0kb downstream 10944 true Chr05K: 697226-708169 Panicum virgatum
Pavir.5KG002400 10.0kb downstream 10.0kb downstream 10000 false Chr05K: 697226-707225 Panicum virgatum

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029089 5273 Angiosperm View MSA
122096105 5267 Panicoideae Singleton cluster - no MSA
124582090 5269 Grass View MSA
121298488 5274 Embryophyte View MSA
123336460 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain