Gene : Thecc1EG024747 T. cacao v1.1
Defline:  (1 of 5) PF00642//PF12796 - Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH) // Ankyrin repeats (3 copies) (Ank_2) Genomic Order:  1622
Name:  ? Thecc1EG024747 Secondary Identifier:  ? PAC:27423749
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024747 0.5kb upstream 0.5kb upstream 4875 true scaffold_5: 28287891-28292765 Theobroma cacao
Thecc1EG024747 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 28287891-28288390 Theobroma cacao
Thecc1EG024747 0.5kb downstream 0.5kb downstream 4875 true scaffold_5: 28288391-28293265 Theobroma cacao
Thecc1EG024747 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 28292766-28293265 Theobroma cacao
Thecc1EG024747 1.0kb upstream 1.0kb upstream 5375 true scaffold_5: 28287391-28292765 Theobroma cacao
Thecc1EG024747 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 28287391-28288390 Theobroma cacao
Thecc1EG024747 1.0kb downstream 1.0kb downstream 5375 true scaffold_5: 28288391-28293765 Theobroma cacao
Thecc1EG024747 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 28292766-28293765 Theobroma cacao
Thecc1EG024747 2.0kb upstream 2.0kb upstream 6375 true scaffold_5: 28286391-28292765 Theobroma cacao
Thecc1EG024747 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 28286391-28288390 Theobroma cacao
Thecc1EG024747 2.0kb downstream 2.0kb downstream 6375 true scaffold_5: 28288391-28294765 Theobroma cacao
Thecc1EG024747 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 28292766-28294765 Theobroma cacao
Thecc1EG024747 5.0kb upstream 5.0kb upstream 9375 true scaffold_5: 28283391-28292765 Theobroma cacao
Thecc1EG024747 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 28283391-28288390 Theobroma cacao
Thecc1EG024747 5.0kb downstream 5.0kb downstream 9375 true scaffold_5: 28288391-28297765 Theobroma cacao
Thecc1EG024747 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 28292766-28297765 Theobroma cacao
Thecc1EG024747 10.0kb upstream 10.0kb upstream 14375 true scaffold_5: 28278391-28292765 Theobroma cacao
Thecc1EG024747 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 28278391-28288390 Theobroma cacao
Thecc1EG024747 10.0kb downstream 10.0kb downstream 14375 true scaffold_5: 28288391-28302765 Theobroma cacao
Thecc1EG024747 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 28292766-28302765 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841033 5264 Brassicales-Malvales View MSA
124346354 5266 SBM View MSA
124246051 5268 Malvidae View MSA
124070984 5270 Rosid View MSA
123746400 5271 Pentapetalae View MSA
122787606 5272 Eudicot View MSA
122046013 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain